Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_1039 |
Symbol | |
ID | 3906707 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 1235124 |
End bp | 1235840 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637878372 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_480150 |
Protein GI | 86739750 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.135118 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGCCA GTGTCGTGCC GCCGTCGGCC GCTGAAGCCG ACTCCGTCGA GGGCTCCGCG CTGATCCGGG TCCTCGTAGT AGATGATCAT GAGTTGTTCC TTCAGGGCCT GCAGACGGTC CTGGAGATCG AGGAGGACAT CAGCGTCGTC GGCCGGGCCG GTAACGGTCA AGAGGCTCTG ACCTTGGCCT CCGGGACATC GCCGGACATC GTCCTGATGG ATGTCCGGAT GCCGGGCCGG GACGGGATCG CCGCGGCGGG TGCCATCAAA CGTGCTGTTC CGCGCACGCG TATCGTGATG CTCACGGTCT CGGACGAGGA GTCTGACCTG TTCGAGGCGA TCAAGGCGGG TGCGGTCGGG TACCTGCTGA AGTCGATTCC GCCGCACGAG GTGGCCGACG CGGTGCGGGC TGTCCACAAT GGGCAGAGCC TGATCAGTCC TTCGATGGCA TCGAAGTTGA TGGTCGAGTT CGCCACGATG GCCCGGGGTA CCGAGGACCG TCCTCGGGCG CACGCCCCGC ACCTGACCGC GCGAGAACTC GAGGTACTGA AGCTGGTCGC TGAGGGGCGC GCGAACCGCG AGATTGCCCG CAAGCTGTTC ATCAGTGAGA ACACGGTCAA GAACCACGTT CGTAACATCC TGGACAAACT GCAGCTGCAC TCGCGGATGG AGGCCGTGAT GTACGCGGTT CGTCAGGGGC TGTTCGACAT CGAGTGA
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Protein sequence | MTASVVPPSA AEADSVEGSA LIRVLVVDDH ELFLQGLQTV LEIEEDISVV GRAGNGQEAL TLASGTSPDI VLMDVRMPGR DGIAAAGAIK RAVPRTRIVM LTVSDEESDL FEAIKAGAVG YLLKSIPPHE VADAVRAVHN GQSLISPSMA SKLMVEFATM ARGTEDRPRA HAPHLTAREL EVLKLVAEGR ANREIARKLF ISENTVKNHV RNILDKLQLH SRMEAVMYAV RQGLFDIE
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