| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0964 |
|---|
| Symbol | |
|---|
| ID | 3903871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1139233 |
|---|
| End bp | 1140699 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637878298 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_480077 |
|---|
| Protein GI | 86739677 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.824604 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCGA CCGATCAGGG GGGCAGGACC GATCAAGCGA GTAGGACCGA TCAAGCGAGT
AGGACCGAGC AGGGGAGCCG GACCGGGCCG GCGGGCAGAC CGGACGACCG CACGGGCCTG
CTCCGTCTGC CCGTTCTGCC GCATCCCCGC CACCCGCTGG AGCGTCCCGA GCGGACGGGC
GGTTCGGCCG CGGAACCGGT CGGTTCCCGG CTGGACGTCG GGCCACAGGT GTCGGTCGTG
ATACCCACCC GCAACGAGGC GCGCAACGTC GAACCGCTGC TGCGGCGCCT CGACGAGGCG
CTGCACGGCC TGTCCGGAGA AGTAATCTTC GTTGACGACT CCGACGACGG AACGCCCGAG
GTCATCGCGC GCGTCCGCCC CTCGGTGCGG TTACCGGTAC GGGTGCACCA CCGGACCCCG
GCCCAGCGGG TCGGCGGGCT GGGGGGCGCG GTCAGCGAGG GCTTCGCGCT CTGTGCCGCG
CCCTATGCGG TGATCATCGA TGGGGACCTC CAGCATCCGC CGGAGACCAT CCCGGCGCTG
CTCGGCACCG CCGTGGAACA TGCCGCCGAT GTGGTGATCG GCAGCCGGTA CGTGTCCGGC
GGCAGCGCAT CGGGGCTCGC TGGAAGCATG CGGCACCTGG TCTCGACGGG GTCGAACCGG
TTGTGTCGGT GGGTCTTCCC CCGTCGGCTG CGCGGCGTCT CGGACGTGAT GAGCGGCTTC
TTCCTGGTAC GGGTCGCCGT CGTGGACCGG GCCGGCCTGC GACCGGACGG CTACAAGATC
CTGCTGGAGC TGCTCGTCGC GTCCGGACGG CTGCGCGTCC GCGAGATCGG GTACGCCTTC
GCCGAGCGGC ACGCCGGGAC CTCCAACGCC TCGCTGACCG AAGGCGCCCG CTTCGCCCGG
CGGCTGTTCG CGTTGCGGGT TCCGAAGCCC GCGCGGTTCG CCCTGGTCGG GGCGTCCGGG
ACGGTGCCGA ACCTGCTTGG CACCGCCGTG CTTCACCACG TCGGCTTGCA CTACCTGGTC
GCGGCGATCG TCGCGACCCA GATCGCCGTC GGCTGGAACT TCCTCGGCTG CGAGCTCCTG
GTCTGGGATC GGGAGACGGG TTCCCGGCTG CGTCGCTATC CGGCGTTCGC GCTCATCAAC
AATCTCGATC TGGTCATTCG GCTGCCACTG CTCGCGGTGC TGGTCGGGCG ATGGCATCTC
GGCGTCGGCA TCTCGACCCT GATGTCCCTG GCCGCCGCGG TGATCGTCCG ATACCTGGTG
GTGGATCGGC TGGTGTACCG GCGACGGGCG GTGTCTGAGC GGGCGGTGTC TGAGCGGGCG
GTGTCTGAGC GGGCGGTGTC TGAGCGGGCG GTGTCTGAGC GGGCGGTGTC TGAGCGGGCG
GTGTCTGAGC GGGCGGTGTC TGAGCGGGCG GTGTCGCCGT CCCACGGAAG GCCGTCGGAG
GACGGGGTGT CCGGTGCGGT TTCGTAG
|
|---|
| Protein sequence | MTSTDQGGRT DQASRTDQAS RTEQGSRTGP AGRPDDRTGL LRLPVLPHPR HPLERPERTG
GSAAEPVGSR LDVGPQVSVV IPTRNEARNV EPLLRRLDEA LHGLSGEVIF VDDSDDGTPE
VIARVRPSVR LPVRVHHRTP AQRVGGLGGA VSEGFALCAA PYAVIIDGDL QHPPETIPAL
LGTAVEHAAD VVIGSRYVSG GSASGLAGSM RHLVSTGSNR LCRWVFPRRL RGVSDVMSGF
FLVRVAVVDR AGLRPDGYKI LLELLVASGR LRVREIGYAF AERHAGTSNA SLTEGARFAR
RLFALRVPKP ARFALVGASG TVPNLLGTAV LHHVGLHYLV AAIVATQIAV GWNFLGCELL
VWDRETGSRL RRYPAFALIN NLDLVIRLPL LAVLVGRWHL GVGISTLMSL AAAVIVRYLV
VDRLVYRRRA VSERAVSERA VSERAVSERA VSERAVSERA VSERAVSERA VSPSHGRPSE
DGVSGAVS
|
|---|
| |