Gene Francci3_0602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_0602 
SymbolsecY 
ID3905885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp687753 
End bp689045 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content61% 
IMG OID637877935 
Productpreprotein translocase subunit SecY 
Protein accessionYP_479715 
Protein GI86739315 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0201] Preprotein translocase subunit SecY 
TIGRFAM ID[TIGR00967] preprotein translocase, SecY subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.637505 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCACCG CCTTCACGCG GGCATTCCGC ACGCCTGACC TGCGCAAGAA GCTGCTGTTC 
ACCGTCGGTA TCGTGATGCT GTTCCGGTTC GGCAGCGTCA TGCCGTCGCC GGGTGTCTCG
ACGTCCGCAG TGAACACCTG CCTGGACTCG GCGAGTGCCG ACAGCAGCAA CGTCTACTCG
CTGATCAACC TGTTCAGTGG TGGGGCTCTG CTGCAGCTGT CCATCTTCGC GCTTGGCATC
ATGCCGTACA TCACATCGAG TATCATCATT CAGTTGCTCG TTGTGGTGAT CCCTCGGCTG
GAGCAGCTGA AGAAGGAGGG CAGCTCGGGC GAGCAGAAGC TTACGCAGTA CACCCGGTAC
CTGACGATCG CCCTCGGTCT TCTGCAGGCC ACCGGCATCG TGGCGCTGGC CCGCAGCGGC
CGGCTGTTCC CCAGCTGTTC GGCCGCCATC ATCCCGGACA CGAGCCTGTT CCGGATCGCG
ACGATTGTCA TCACGATGAC GGCGGGTACC TCGGTCATCA TGTGGATGGG TGAGTTGATC
ACCACCCGGG GGGTCGGTAA CGGCATGTCG CTGCTGATCT TCACCTCGAT CGCGGCAAGG
CTTCCCTCCG AGGGCGGACG CATCCTCCAG GTCGCCGGCG GTGTGGTGTT TAGCCTGGTG
CTCCTGCTCG GTCTCGCGAT CGTCGTGTTC GTCGTGTTCG TCGAGCAGTC TCAGCGTCGC
ATCCCGGTCC AGTACGCCAA ACGCCTGATC GGGCGGCGGA TGTACGGCGG GACGTCGACC
TACCTGCCGA TCAAGGTCAA CCAGGCCGGG ATCATCCCCG TCATCTTCGC GTCCTCGCTG
CTGCAGCTCC CTCAACTCGC CGGGCAGGTA TGGAGCAACC GGAGCTTCCA GGACTTCGAG
CAAAGATATC TCTCCAGGGG AGACCATCCA CTCTATCTGG TGACATACTT CGCACTCATC
ATCTTCTTCA CCTATTTTTA TGTTGCGATC ACCTTCAACC CAACGGAGGT CGCGGACAAC
ATGAAGAAGT ATGGTGGGTT CATCCCCGGG ATCAGGCCGG GGAACCCGAC GGCGGAGTAC
CTCAAACATG TACTCGACCG GATCACGCTC CCGGGATCGC TGTTCCTTGG CGTGATCACG
GTCCTTCCGT TGGCACTGTT GAACCTGACC AAGGACCAGC CGTTCCCCTT CGCGGGCACG
TCGGTCCTGA TCATGGTGGG GGTTGGGCTG GAAACCGTGA AGCAGATCGA AAGCCAGCTC
ATGCTCCGCA ATTACGAAGG TTTCCTCCGG TAG
 
Protein sequence
MLTAFTRAFR TPDLRKKLLF TVGIVMLFRF GSVMPSPGVS TSAVNTCLDS ASADSSNVYS 
LINLFSGGAL LQLSIFALGI MPYITSSIII QLLVVVIPRL EQLKKEGSSG EQKLTQYTRY
LTIALGLLQA TGIVALARSG RLFPSCSAAI IPDTSLFRIA TIVITMTAGT SVIMWMGELI
TTRGVGNGMS LLIFTSIAAR LPSEGGRILQ VAGGVVFSLV LLLGLAIVVF VVFVEQSQRR
IPVQYAKRLI GRRMYGGTST YLPIKVNQAG IIPVIFASSL LQLPQLAGQV WSNRSFQDFE
QRYLSRGDHP LYLVTYFALI IFFTYFYVAI TFNPTEVADN MKKYGGFIPG IRPGNPTAEY
LKHVLDRITL PGSLFLGVIT VLPLALLNLT KDQPFPFAGT SVLIMVGVGL ETVKQIESQL
MLRNYEGFLR