Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_0540 |
Symbol | |
ID | 3904191 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 626165 |
End bp | 626875 |
Gene Length | 711 bp |
Protein Length | 236 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637877869 |
Product | NADH dehydrogenase subunit C |
Protein accession | YP_479653 |
Protein GI | 86739253 |
COG category | [C] Energy production and conversion |
COG ID | [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit |
TIGRFAM ID | [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.363465 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.186456 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAGCGACG AGAGCACAGC CTCCGCCGAC CTGATACCGG GCGCCGCCGG CGTGCCCGGC GGTCCGGGTG GGCAGCGCCG GGACGCGTTC GGCGCCGGTG ACAGCGGTGA CACCTCCGGG TTCGGCGGGC TCGTCACGCC CGTTCCGATC CTGAGCTCCA CCGCCCGCCC GTTCGGTGAC GCCGACGCCG ACGCCGTCTA CGACGCGCTC GAACGTGCCT TCCCCCAGCT CGGCGACGCC GTCGAACGGG TGGTGGTGGA CCGCGGGGAG CTGACCGTCC ACGTGCGCCG GGAGAGCCTC GTCGCCGTCG GGCAAACCCT GCGCGACGAC CCCGACCTGC GGTTCGAGCT GCTGTCCTCG CTGTCCGGCG TGGACTACCC GGACGACGTC ACCGGCCGTC GCCTGCACTC GGTGGCCCAC CTGACCTCGA TGACGCACCG TCGCCGGGTC CGGGTCGAGG TGTCCGTCAC CGACGCCGAT CCCACCGTGC CGAGCCTGAC CTCGGTGTGG CCCACCGCGG ACTGGCACGA GCGCGAGACC TACGACATGT TCGGCATCGT CTACACGGGT CATCCGGGCC TGACCCGGAT CATGATGCCG GACGACTGGA TCGGGCACCC GCAGCGCAAG GACTACCCGC TGGGGGGCAT CCCCGTCGAC TACAAGGGTG CCACGATCCC GCCGCCAGAC GAGCGCCGGA GCTACTCGTG A
|
Protein sequence | MSDESTASAD LIPGAAGVPG GPGGQRRDAF GAGDSGDTSG FGGLVTPVPI LSSTARPFGD ADADAVYDAL ERAFPQLGDA VERVVVDRGE LTVHVRRESL VAVGQTLRDD PDLRFELLSS LSGVDYPDDV TGRRLHSVAH LTSMTHRRRV RVEVSVTDAD PTVPSLTSVW PTADWHERET YDMFGIVYTG HPGLTRIMMP DDWIGHPQRK DYPLGGIPVD YKGATIPPPD ERRSYS
|
| |