Gene Francci3_0308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_0308 
Symbol 
ID3903340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp354896 
End bp355615 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content69% 
IMG OID637877637 
Producttwo component transcriptional regulator 
Protein accessionYP_479424 
Protein GI86739024 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACTG CCCCGCGTGT GCTGGTCGTC GACGATGAGC CGAACATCGT CGATCTGCTG 
CGGATGGCGT TACGTTTCCA TGGTTTCGAC GTCCTGACCG CGACCACCGG TCGGGCGGCG
CTTGAGTTGG CCGTCGCGGC CCGGCCGGAT CTGATGATCC TTGATGTGAT GCTGCCCGAC
ATCGACGGCT TCGAGATCTG CCGGAGGTTG CGCGCGGACG GGCACCCGGT ACCCGTCGTC
TACCTGAGCG CGCGCAACGC TCACCGGGAC AAGATCGCCG GCCTCACCTA CGGCGGCGAC
GACTACGTCA CCAAGCCGTT TGCCGTCGAC GAGCTCCTCG CCCGGGTCCG GGCCGTGCTG
CGCCGGACGT CACCTCCGCC GGCCGAACCG GCACCCGCGC CGCCGTCCCC GCTGCGGTTC
GCCGACGTGG AACTTGACCC GGACGCCCAT CTCGTCCGCC GCGCCGGGGA GCCGATCGAC
CTGTCGCCGA CGGAGTTCTC CCTGCTGCGG TACTTCCTGA CCAACCCTAA CCGGGTGCTG
TCCAGGACCC AGATCCTCGA CGCGGTGTGG AGCTACGACT ACGGGGGCGA GTCGACCATC
GTGGACCAGT ACGTCAGCTA CCTGCGGCGC AAGCTCGGCC GGCACGGCCC GTCCCTCATC
CACACCCAGC GCGGTTTTGG CTACGTGCTG CGCCTTCCGG TGGCGGGGTC CAACCGGTGA
 
Protein sequence
MSTAPRVLVV DDEPNIVDLL RMALRFHGFD VLTATTGRAA LELAVAARPD LMILDVMLPD 
IDGFEICRRL RADGHPVPVV YLSARNAHRD KIAGLTYGGD DYVTKPFAVD ELLARVRAVL
RRTSPPPAEP APAPPSPLRF ADVELDPDAH LVRRAGEPID LSPTEFSLLR YFLTNPNRVL
SRTQILDAVW SYDYGGESTI VDQYVSYLRR KLGRHGPSLI HTQRGFGYVL RLPVAGSNR