Gene Francci3_0082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_0082 
Symbol 
ID3905126 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp100068 
End bp101192 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content72% 
IMG OID637877412 
Productphosphoserine aminotransferase 
Protein accessionYP_479205 
Protein GI86738805 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG1932] Phosphoserine aminotransferase 
TIGRFAM ID[TIGR01366] phosphoserine aminotransferase, putative
[TIGR01365] phosphoserine aminotransferase, Methanosarcina type 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTGACG CTCCCGCGAT CGTGCTGCCC GACCGGCTGC GTCCCCGGGA CGGCCGGTTC 
GGCTGTGGCC CGTCGAAGAT CCGTCCCGAG GCGGTCGAGG CCCTCGCCAC GAGCGGGGCG
ACCTACCTCG GCACCTCACA CCGGCAGAAG CCGGTCAAGA GCCTGGTCGG CCGGGTGCGG
GCAGGCCTGT CCGAGCTGTT CTCCCTGCCC GAGGGCTACG AGGTCGTGCT CGGGATCGGC
GGCGCCACCG CCTTCTGGGA CGCGGCAGCC TTCAACCTCG TCCGGACCCG CTCCCAGCAC
CTCGTCTTCG GCGAGTTCGG GGGCAAGTTC GCCGACACGA CGAAGGGCGC GCCGTTCCTG
GCCGCGCCGT CGGTGATCTC CTCGCCGCCC GGTACGCATC CGGACTGGGC GCCGGAGGCG
GGCATCGACG TCTACGCCAC TCCGCACAAC GAGACCTCGA CCGGTGTCGC CCGTCCGGTC
CGCCGGCCGG TGGGTGCGGA CGACGGCGCC CTGCACCTGG TCGACGCCAC CTCGGGGGCC
GGCGGGCTGC CGGTCGACGT GCGCGAGGTG GACGTCTACT ACTTCGCGCC GCAGAAGAGC
TTTGCCTCCG ACGGCGGCCT GTGGGCGGCG CTCGTGTCCC CGGCGGCGAT CGACCGGCTC
GCCGAGATCG CCGCGACGGA CCGGTGGATC CCGCCGTTCC TCGATCTCAC CACGGCCCGG
GACAACAGCT CCAAGGACCA GACCTACAAC ACCCCGGCAG TCGCGACGCT GTTCCTGTTC
GCCGACCAGA TCGAGTGGAT GCTCGCCCAG GGCGGGCTGG ACTGGTGCGT GCGGAGGACC
GCGGAATCGT CGTCCATCCT CTACACCTGG GCCGAGAAGA CCTCCTACGC GACACCGTTC
GTCGCCGACC CGGCCGCGCG TTCACAGGTC GTCGTGACGG TCGACTTCGA GGGGGTGGAC
GCCGCCGCCG TGGCCAAGGT GCTGCGCGCC AACGGTGTCG TCGACGTCGA GCCCTACCGC
AAGCTCGGCC GCAACCAGCT GCGGGTGGCC TGCTTCCCGG CGGTCGAGCC GGCCGACGTC
GAGGCGCTCA CCACGAGCAT CGACTACGTG GTCGAGCACC TGTAG
 
Protein sequence
MADAPAIVLP DRLRPRDGRF GCGPSKIRPE AVEALATSGA TYLGTSHRQK PVKSLVGRVR 
AGLSELFSLP EGYEVVLGIG GATAFWDAAA FNLVRTRSQH LVFGEFGGKF ADTTKGAPFL
AAPSVISSPP GTHPDWAPEA GIDVYATPHN ETSTGVARPV RRPVGADDGA LHLVDATSGA
GGLPVDVREV DVYYFAPQKS FASDGGLWAA LVSPAAIDRL AEIAATDRWI PPFLDLTTAR
DNSSKDQTYN TPAVATLFLF ADQIEWMLAQ GGLDWCVRRT AESSSILYTW AEKTSYATPF
VADPAARSQV VVTVDFEGVD AAAVAKVLRA NGVVDVEPYR KLGRNQLRVA CFPAVEPADV
EALTTSIDYV VEHL