Gene Francci3_0030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_0030 
Symbol 
ID3903605 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp35871 
End bp37199 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content70% 
IMG OID637877360 
Productsecretory lipase 
Protein accessionYP_479153 
Protein GI86738753 
COG category[I] Lipid transport and metabolism 
COG ID[COG2267] Lysophospholipase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGTCAG CGCGGTCAGC GCGGTCAGCG CGGTCAGGGA GACCGACGCG ACCGGCTGCG 
GGGGCCACCC CTGTCGGGGC GCACCGATGC CCTTCCCACC CGGTCCGTAC CCCGCTGCTC
ATGGTCCTGC TTCTGCTCGG GCTCCTGCTC GGACTGCTGC CCCTTGCGGC CTGCGGAAAG
CGGGATGGCA ACGACGGATC ATCCCCCGCA ATCAGTGCCG GCGGACCCGA TGAGCGAGGT
GCATCGTTAC CACCGGGAAC CCGCGGGGAA ATTCTGTCCA GTCAGGTGGT CGCGCCGGCC
CCGACCGGCA TCCGGGCGTG GCGGGTGATG TACCGATCCC ACGCGACGTC GGGCGTCGAC
ATTCCGGTGT CCGGGATAAT CCTGGCCCCG GAGGAGAACG TTCCGGTTCC GCCGGGCGGC
CGAAGAATCG TCGCGTTCGG GCATGGCACC ACGGGCCTCA AGGATGCCTG TGCACCGTCG
GCGGCACGAC CCGCGCTGAT CGCCGCCGCC TCGACTTTTC CGCTCGTCCG GGCCGGTTAT
GTCGTGGCCC TCACAGATTA TCCGGGGCTG GGGAGTCCCG GCGAACACGC GATCTATGTT
GCCGAGCCGG AGGGCAGGGC CGTGCTTGAC GCGGCGCGCG CCGCCGCCGC CCTCAAGGCG
ACCGGTGCCG GTCGCGACGT CGTCCTCTGG GGCTATTCGC AGGGCGGCCA GGCGGTGTTG
GCCGCCGGAG CGATTGCCGC CGCCTACGCA CCCGAGCTAC GGATCCGGGG AGTCGTCGCA
ACCGCCCCCC TGGCCGACCT GCCGGCGTCC CTCGCCACCT TGCAGCACAA TGCCGACGGG
GTCGCCTATG TCCTGCTGGC GATGATCGGG CTGTCCGTCG AGGACCGGAC GATCAACCTG
GACCGGGTAC TCACCCCGAC CGGCCGGCGA CTGCTGTCGA TCGCCCGCGA CCGCTGCGCC
ACCGACCTCA TCAGGGCAAG CATCGGTACG TCCGTCAGCA CCGCCTTTAC CGTCAATCCA
CTGGATCATC AGCCATTCGC AGCCGGATTC GCCCGGCAGC GAGAGGTGGC CCTGCGGAAG
ATGGCTCCGA CCCTCGTTCT CCAGGGCGAC CTCGACCTGG TGATCCGACG CCCGGTGACC
GACAGCGTGG TCACCGGGCT GTGCCGGAAG GGCACGACCG TGGACTACCG GCGTTACCCC
GACGCGGACC ACGGCACCGT CCTCGGCGCA TCGATGGCCG AGCTCACCGC CTGGGTCGCG
CAGCGCTTCG CCCCGCACCC GCCGCCGGTC ACCGACATCT GCGAGATGCG CGCAGCTCGG
TTCGGATAA
 
Protein sequence
MRSARSARSA RSGRPTRPAA GATPVGAHRC PSHPVRTPLL MVLLLLGLLL GLLPLAACGK 
RDGNDGSSPA ISAGGPDERG ASLPPGTRGE ILSSQVVAPA PTGIRAWRVM YRSHATSGVD
IPVSGIILAP EENVPVPPGG RRIVAFGHGT TGLKDACAPS AARPALIAAA STFPLVRAGY
VVALTDYPGL GSPGEHAIYV AEPEGRAVLD AARAAAALKA TGAGRDVVLW GYSQGGQAVL
AAGAIAAAYA PELRIRGVVA TAPLADLPAS LATLQHNADG VAYVLLAMIG LSVEDRTINL
DRVLTPTGRR LLSIARDRCA TDLIRASIGT SVSTAFTVNP LDHQPFAAGF ARQREVALRK
MAPTLVLQGD LDLVIRRPVT DSVVTGLCRK GTTVDYRRYP DADHGTVLGA SMAELTAWVA
QRFAPHPPPV TDICEMRAAR FG