| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0015 |
|---|
| Symbol | |
|---|
| ID | 3902962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 18601 |
|---|
| End bp | 20655 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637877345 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_479138 |
|---|
| Protein GI | 86738738 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGGATC TGGATCCGGG AACGAGTGAC CTCGCCGTCC CGGATGGATC CGGATGGCGG
CGGGTCATGC GGGTGCCAGG ACGACGGCAT TACCATCACG AGCACCACGA TCGCGCCATC
GCGACCGTCC AGCAGGCCCG GAGCCGTACT CGATCGACGG GCCGGAGTTG CGTCGTCGGC
CTTCTGTACA TCGCCGAGTT CGGCCGGCTG CGCGAGCGCC TCGCTCCGGG CGCCTGCCTG
TCTCTACTCG ATCAGGTCGC CGCCCTGGCA GGTGATCTGC ATCGGTGGCG TGGCTCCGCC
ATCGGCCAGG GCCGCCCCGG CGAGGTGGTC GTCGTCCTGC CGACGCGGCC GGGCCGCTCC
GCCGAAGCGG CGTTCGGCGA GATCGTGCGT ACGGTCGCAA GCTGTGACTT CGCCGTCAAC
GGCGAGCGTC TGCGGGTCAC CCCCGTTCCG GGGTTCGTCC AGGTGGACGA CACCATCGAT
GATGCCACCG CCCTGCGGCG GGCCCGGCTG GCCATGGGGC TCGCCGCAGG GCAGCTCGAC
ATGGTCCCCG TCTGTTACGA CCCGAAGATG GAACCAGCGG AGAACCAGCC GCGACGTTCC
GGGCGCCCGT TGCACACACG GTTGCGGCCG TCCGACGCCG TCCAGATCGT CGTCTCGACC
GCGATCTGCC TCGGACTCCC GTTCGGGATC TACAGCACAC TGTTCACACT GGGCCTCGAC
CCGACCCACG TCGTCTTCGC ACTCCTGGCC ATCGCGCTGG CCGGCACTAC CCTCACCACC
TACCTGGAGC AGTTGTCGGC GCTCGAACCG GAGAAGTGCC CGGACGCGCC CGCCGCGCCG
TTCCCGGCGG CGAGCGCCAT CATCGCCGCG TATCTGCCGA ACGAGTCGGC CACGATCGTC
GACACGGTCA AGGCGTTCCT CCGGCTGGAC TACCCGGGTC CACTACAGAT CATCCTCGCC
TATAACACTC CCCGATACCT GCCCGTGGAG GAGACGCTCG CGCGGATCGC CGATTCCGAT
CCCCGTTTCA TCCCGATGCA CGTGCCGACC AGCACCTCCA AGGCGCAGAA CGTGAACGCG
GCGATGCCAA TGATCACCGG TGAGTTCGTC GGTGTCTTCG ACGCGGATCA TCATCCGGCA
CCGGACGCCT TCCGGCGGGC CTGGCGGTGG CTGTCGCACG GGGCCGCGGT CGTCCAGGGG
CACTGCGTGA TCCGGAACGG AGAGGCATCG CGGATCAGCC GCACCGTCGC CGTGGAATTC
GAGTCGATCT ATGCGGTGAG TCATCCCGGC CGGGCGAGGA TGCATGGTTT CGGGATCTTC
GGCGGGTCGA ACGGCTACTG GCGGACCGAC CTGCTGCACC AGACCCGTAT GCGCGGGTCG
ATGCTGACCG AGGACATCGA CGCGAGTCTG CGCACCATCA TGAGCGGTGA GCGGATCGTC
GCAGACCCGG AACTGGTCTC CTACGAGCTG GCGCCGACGA CGATGTCGGC GTTGTGGCGG
CAGCGGTTGC GCTGGGCGCA GGGTTGGTAC CAGGTCTCCC AGCGGCATCT GTGGAAAGCC
GTCGGCTCAC CCGACCTCAC CGCCCGCCAG AAACTCGGCC TGCTCTGGCT GCTGGGCTGG
CGCGAGATAT ATCCGTGGCT TTCGCTGCAG ATGTATCCGC TGATCGTCTT CGGTCTGCTG
CACCCGCAGT CCGGGCACGG TTTCCGGTTG AACGTCTCCC TGTACGTGGT CGCCACACTC
TTCTCGGCGA TGGCGGGCCC GATCCAGGCG TTGTTCGCGT ACGCCCTCGC CGACCCCACG
ATCCGCCGCC ATCGGAGTTG GTTCGTCCAG TTCTGCCTGA TGAACATCGT CTACAGCGAG
TTCAAGAACG TCATCGCCCG GCTGGCACCG GTGAAGGAGC TGCTGCGGGA ACGCGAGTGG
CACGTGACCC CACGCGCCGT GCCGCAGCCC GACCCGGTCA CGCCGGACGG CGCGACCGCA
CCTCCAGCTG GCTCCGCACC TCCAGCTGGC TCCGCGGCGG GCGGTGTGGT CCCTTACCCC
GAAGCCAGGT CATGA
|
|---|
| Protein sequence | MVDLDPGTSD LAVPDGSGWR RVMRVPGRRH YHHEHHDRAI ATVQQARSRT RSTGRSCVVG
LLYIAEFGRL RERLAPGACL SLLDQVAALA GDLHRWRGSA IGQGRPGEVV VVLPTRPGRS
AEAAFGEIVR TVASCDFAVN GERLRVTPVP GFVQVDDTID DATALRRARL AMGLAAGQLD
MVPVCYDPKM EPAENQPRRS GRPLHTRLRP SDAVQIVVST AICLGLPFGI YSTLFTLGLD
PTHVVFALLA IALAGTTLTT YLEQLSALEP EKCPDAPAAP FPAASAIIAA YLPNESATIV
DTVKAFLRLD YPGPLQIILA YNTPRYLPVE ETLARIADSD PRFIPMHVPT STSKAQNVNA
AMPMITGEFV GVFDADHHPA PDAFRRAWRW LSHGAAVVQG HCVIRNGEAS RISRTVAVEF
ESIYAVSHPG RARMHGFGIF GGSNGYWRTD LLHQTRMRGS MLTEDIDASL RTIMSGERIV
ADPELVSYEL APTTMSALWR QRLRWAQGWY QVSQRHLWKA VGSPDLTARQ KLGLLWLLGW
REIYPWLSLQ MYPLIVFGLL HPQSGHGFRL NVSLYVVATL FSAMAGPIQA LFAYALADPT
IRRHRSWFVQ FCLMNIVYSE FKNVIARLAP VKELLREREW HVTPRAVPQP DPVTPDGATA
PPAGSAPPAG SAAGGVVPYP EARS
|
|---|
| |