Gene Francci3_0014 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_0014 
Symbol 
ID3902961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp17127 
End bp17819 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content68% 
IMG OID637877344 
Productpeptide deformylase 
Protein accessionYP_479137 
Protein GI86738737 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0242] N-formylmethionyl-tRNA deformylase 
TIGRFAM ID[TIGR00079] peptide deformylase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGCCA TGGCCTCGCG CTTGACGCGA TCTGACGAGA AGGACGAGAA GGACGAGAAG 
ATCGATCGGC GGGTCCGGGT GCTGGGGGAG CCGGTGGACT CCTACCCCCA GCTGCCGCCG
GAGGTCGGCC GCGGTTCCAT CCGCAGGATC ACCGTTGTCG GCGAGCCTGT TCTGCACCGG
CCCTGTAAGA AAATCACCGA GTTCGGGACC GCGGAGCTCG CTGCGCTGAT CGATGACATG
TTCACCACCA TGTACGGCGC CGAAGGTGTC GGACTCGCCG CGAACCAGAT CGACGTCGAC
GCCGCGGTCT TCGTCTATGA CTGCACCGAC GAGGACGGTG TGCGGCACGT GGGCCATCTG
GTCAACCCCG TCCTGGAGGA GGCGCCGCCG GCGGAGCGCC GGCTCGTCAA GGGGGATGAG
GGGTGCCTGT CTGTTCCGGG GGCCTACATG GAGGTCGCCC GGCTGGAGCA TGCTGCTGTC
CGCGGTCAGG ACCAGCACGG TGCCCCGCTC CGCCTGGAGG GAACCGGCTA TTTCGCCCGT
TGCCTGCAGC ATGAGACCGA TCACCTGTAC GGCAGCCTCT ACCTGGACCG GCTGTCGAGC
CGCGGACGCA AGAAGGCCCT CCGCGAGATG GAGGAGCGGA CCGAGGAGAT CTTCGCCCGC
CGGGTCGAGG TGGCCGCGCG GCTCGGCAGG TAG
 
Protein sequence
MLAMASRLTR SDEKDEKDEK IDRRVRVLGE PVDSYPQLPP EVGRGSIRRI TVVGEPVLHR 
PCKKITEFGT AELAALIDDM FTTMYGAEGV GLAANQIDVD AAVFVYDCTD EDGVRHVGHL
VNPVLEEAPP AERRLVKGDE GCLSVPGAYM EVARLEHAAV RGQDQHGAPL RLEGTGYFAR
CLQHETDHLY GSLYLDRLSS RGRKKALREM EERTEEIFAR RVEVAARLGR