Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BTH_I1707 |
Symbol | |
ID | 3849809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia thailandensis E264 |
Kingdom | Bacteria |
Replicon accession | NC_007651 |
Strand | - |
Start bp | 1915474 |
End bp | 1918680 |
Gene Length | 3207 bp |
Protein Length | 1068 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637841376 |
Product | ribonuclease E |
Protein accession | YP_442242 |
Protein GI | 83719665 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000337375 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTGTTCA ATGCGACGCA GCAGGAAGAA CTGCGCGTCG CCATCGTCGA TGGGCAGAAG CTCATCGACA TCGACATCGA AACCGCCGGC CGCGAACAAC GCAAAGGCAA CATCTACAAG GGCGTCGTCA CCCGCATCGA ACCGTCGCTC GAAGCCTGCT TCGTCAACTA CGGCGAAGAC CGCCACGGCT TCCTGCCGTT CAAGGAAGTC GCCCGCCAGT ACTTCAAGGA AGGCGTCGAC ATGCGCTCCG CGCGCATCCA GGACGCGTTG CGCGAAGGCC AGGAGCTGAT CGTCCAGGTC GAGAAGGAGG AGCGCGGCAA CAAGGGCGCG GCGCTCACCA CCTTCATCTC GCTCGCCGGC CGCTATCTCG TGCTGATGCC GAACAACCCG CGCGGCGGCG GCGTGTCGCG CCGCATCGAG GGCGACGAGC GCCAGGAACT GCGCGAGACG ATGGCGCAAC TGCAGATCCC CGACGGCATG AGCATGATCG CCCGCACGGC GGGCATCGGC CGCAGCGCCG AGGAACTGCA GTGGGACCTG AACTACCTGC TGCAGCTCTG GCGCGCGATC GAGGCGGCGT CGCAAAGCGG CCATCCCGGC CAGCCGATGC TGATCTACCT CGAATCGAGC CTCGTGATCC GCGCGATCCG GGACTATTTC CAGCCCGACA TCGGCGAAAT CCTGATCGAC ACGACCGAGA TCTACGATCA GGCCCGCGCG TTCATGGACA TCGTGATGCC CGACAACGTC GGCAAGGTGA AGCGCTATCA CGACGACGTC CCCCTCTTCT CGCGCTTCCA GATCGAGCAC CAGATCGAAA CCGCGTACTC GCGCACGGTG CCGCTGCCGT CGGGCGGCGC GATCGTGATC GACCACACCG AGGCGCTCGT CGCGATCGAC GTGAACTCGG CGCGCGCGAC CAAGGGCGCG GACATCGAGG AGACGGCGAC CCGCACGAAC CTCGAGGCGG CCGATGAAGT GGCGCGCCAG CTGCGTCTGC GCGACCTCGG CGGCCTGATC GTGATCGACT TCATCGACAT GGAGTCGGCC AAGAGCCAGC GCGAAGTCGA GCAGCGCCTG AAGGACGCGC TCAAGCACGA CCGCGCGCGC GTGCAGATGG GCAAGATCTC GCGCTTCGGC CTGATGGAGC TGTCGCGCCA GCGCCTGCGC CCGGCCCTGT CCGAAGGCAG CCACGTCACC TGCCCGCGCT GCAACGGCAC GGGCCACATC CGCGACACCG AATCGTCCGC GCTGCAAGTG CTGCGGATCA TTCAGGAAGA AGCGATGAAG GAGAACACCG CGGCGATCCA CTGCCAGGTG CCCGTCGAGG TGACGGCCTT CCTGCTCAAC GAAAAGCGCC AGGAAATCAA CAAGATCGAG TCGCGCTTCA AGGTCGGCGT CGTGCTGATC CCGAACAAGC ACCTCGATAC GCCGCACTAC AAGCTCGAGC GCCTGCGTCA CGACGATGCG CGCCTCGACG ATCCGCGCGC ATCGTGGAAG ATGGCCGAGG AAGCCGCCCG CGAGCTCGAG GCGGAAACCG GCTACAGCAA GCGCGCCGAG GAAACGAAGC CGCGCCAGGA AGCGGCCGTC AAGGGCATCA CGCCCGAGCG TCCGGCGCCG AGCCCCGCGC CGCAGCGCCA GAGCGCGCCG GAAGCGGCTG CGCCCGTGGC CGCCGCGCCC GCGAGCGGCG GTTTCATGAA GTGGCTGAAG GGCCTGTTCG GCGTGCAGCC CGCCGCGGCG CCCGCACCGG CGCCCGCCGC GCAGGAAGCG GCCGCGCGTC CGGCGCGCGA GCGTGGCGAA CGCGGCGAGA AGGCCGAGCG CGGCGAACGC GGCGGCGATC GCAACCGCAA CCGTCGCGGC GGCGCCGCGC AGCAAGCCGG CGGACGCGAT CAGGCAGCGG CAGGCGGCGG CCGCGGTCAG GCGCAGCGCG CCGAGCGCGA AGGCAAGGAA ACCCGCGAGC CCCGCGAAGG CCGCGAAGCA CGCGGCGGCC GGGACAACCG GGAAGGCCGC GAAGCACGCG AAGCACGCGA AACCCGCGAA CCGCGCGAAC CGCGCGAACA ACGCGAGCCG CGCGAACCCC GTGAGCCGCG CGAACAGCGC GAACCCCGCG AACGCGCCGA AACGGCCGAC GCCTCGGAAG CGCCGCGCGG CGAGCGCCGT GAGCGCGGTG AGCGTCGCAA GCCGGCCCAG CACGTCGCGA CGCTCGAAAC CGTGAACCGC GGCGAAAGCG CACTCGCGGA AGCCGCTGAA AAGCCGGCGT ACGCGCCTGG CGCGGAAGCC GGCGTCGACG CGGATTCGAA CGCGCGTGAC GGCGAGGAAC GCCGCCGCCG CCGCCGCGGT CGCCGTGGCG GCCGCCGCGA GCGCGAGGAC GAAGGCGCAG CGCACGCTGC GGAAGGCGGC GAAGGCGTGA CGGTCGAAGC GTTCGAGCAT GCCGAGCAAG CGCAGCAAGG CGTCGCGCCT GCCGCCGGCC ACGAGCCGCA GCATGTCGCG CAAGCGGGCG CGGGTGCGGC GGCAGTCGCG GCTGCGGCCA TCGCCGCTGA TTCTGCCGCG CATGTCGAGA GCGGCGCGAA GGTCGAGCCG CAACCGGCAG CCGGGGCGCC CGTCGCCGAC ACGCAGCGTG CCGAGGCGGC GCCTGCGCGA CTGGTCGAAG CGCCGGCGCA AGCCGCTTCG ACGGCTCAAG CCGAAGTCGA GCAAGCCGCT CCGGCAACCG CGGCGCACGT ACAGCCGGCT GCGGCCGATG TCGCGCACGA GCCCCCCGCT CCGGCCGCAA CCGCCCCCGC CGAAGCCGCC CCGGCCGAAG CGCCTGCCGC GGAAGCGTCC GAAGTCGCCG CACCCGCGGT CGCTCCGGCC GTGGTCGCGG AGCCTGCGCC GGTCGCCGAA ACGCAGCAGC CCGCTGCTGT CGCGGCGGCC GCACCGCTCG CAGCGCCTGT CGCGCACGAG CCGGCTCCCG TCGCCGAGAC GCACGTCCCG GCGGCCGCTC GAGCCGAGGC GGCCACTCCG GCCTCCGTCT CGACCGCGGG CGCGAGCCTC GACACGGTGC TCGAAGCCGC CGGTCTCGTG TGGGTCAACA CCGACACGGA CAAGCTGCGC GCCGCGCAGG CCGCCGCCGC GCAAATCGTG CCGCCCGCGC GCGTGCCGCG CGAACGCAAG CCGTTGCCGC CCGTCGACGC GGCGCCGATG CAGCAGGTCG AGACGACGCA CCGCTGA
|
Protein sequence | MLFNATQQEE LRVAIVDGQK LIDIDIETAG REQRKGNIYK GVVTRIEPSL EACFVNYGED RHGFLPFKEV ARQYFKEGVD MRSARIQDAL REGQELIVQV EKEERGNKGA ALTTFISLAG RYLVLMPNNP RGGGVSRRIE GDERQELRET MAQLQIPDGM SMIARTAGIG RSAEELQWDL NYLLQLWRAI EAASQSGHPG QPMLIYLESS LVIRAIRDYF QPDIGEILID TTEIYDQARA FMDIVMPDNV GKVKRYHDDV PLFSRFQIEH QIETAYSRTV PLPSGGAIVI DHTEALVAID VNSARATKGA DIEETATRTN LEAADEVARQ LRLRDLGGLI VIDFIDMESA KSQREVEQRL KDALKHDRAR VQMGKISRFG LMELSRQRLR PALSEGSHVT CPRCNGTGHI RDTESSALQV LRIIQEEAMK ENTAAIHCQV PVEVTAFLLN EKRQEINKIE SRFKVGVVLI PNKHLDTPHY KLERLRHDDA RLDDPRASWK MAEEAARELE AETGYSKRAE ETKPRQEAAV KGITPERPAP SPAPQRQSAP EAAAPVAAAP ASGGFMKWLK GLFGVQPAAA PAPAPAAQEA AARPARERGE RGEKAERGER GGDRNRNRRG GAAQQAGGRD QAAAGGGRGQ AQRAEREGKE TREPREGREA RGGRDNREGR EAREARETRE PREPREQREP REPREPREQR EPRERAETAD ASEAPRGERR ERGERRKPAQ HVATLETVNR GESALAEAAE KPAYAPGAEA GVDADSNARD GEERRRRRRG RRGGRRERED EGAAHAAEGG EGVTVEAFEH AEQAQQGVAP AAGHEPQHVA QAGAGAAAVA AAAIAADSAA HVESGAKVEP QPAAGAPVAD TQRAEAAPAR LVEAPAQAAS TAQAEVEQAA PATAAHVQPA AADVAHEPPA PAATAPAEAA PAEAPAAEAS EVAAPAVAPA VVAEPAPVAE TQQPAAVAAA APLAAPVAHE PAPVAETHVP AAARAEAATP ASVSTAGASL DTVLEAAGLV WVNTDTDKLR AAQAAAAQIV PPARVPRERK PLPPVDAAPM QQVETTHR
|
| |