| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I0088 |
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| Symbol | |
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| ID | 3848092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia thailandensis E264 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007651 |
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| Strand | - |
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| Start bp | 93414 |
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| End bp | 94865 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637839761 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_440648 |
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| Protein GI | 83720670 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000283507 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTCT CAGAGCGCGA AGTGCGCTAC GAACAGGGCA TCGACCGATT GCTCGAACTT
GCCTGCGCCC GCGACGACAC GGAATATGCC GAGCTCGCCG ACGAGTTCGC GAGCGCGCCG
TCCGACACAC ACGCTCACGC GCACGACCTC GGCGAGCCCG AGTTCCTCGA TCGCCACGCA
TCCGACGAAA GCGCCGGCAC CGGTTCGTTC GGCGACAAGC CGACGCGAGC CGCTCACGCC
GATGCCGATT GGCACGACGG CGACGTCGTC GATGCTCAGT CGTCCGAACC CAGCGACGCC
ACGCCGGACG ACACCGCGGT CTCGACCGAT CCGCTCGCGC TCTTCGTGCG CCGGATGCAC
GCGGTGCCGC TGCTGACGCA CGCCCAGGAA ATCGCGCTCG CCACCGAAAT CGAGGCGGGA
CGCGAGCAGG TGTTGCAAGC GCTCGCCGAG ACGCTCGATC TTCTCGAACT CGCGTCGCTG
CCGGACGATC CGGCGCTCGG CCGCGCGCGC GCCGCGTTGC AACGCGCACG CGCCCGCGGC
GACGAAGGGG CGCGCGCGTT CGCCCGCGCG CGCAAAGCGG CGTATGCGGC GCTCGCCGCT
CATGGTTGGC CGTCGGCGGA AATCGATGCG ATGCGGCGTG CAATGCGCCG GCTGCCGACG
CCGCCGGAAC AAGGCGATGC GGGCGCGCTG CCGGCGTTCG CGGACGGCGA GGCGCGAATC
TCCGCCGCAA CCGCGAGAAT GGCGGAAGCG AACCTGCGGC TCGTGCTGTC GATCGCGCGC
AAATATGCGT CGCGCGGCCT GGATCTCGCC GATCTGCTGC AGGAGGGCAA CCTCGGCCTG
CTGCGTGCGA TCGAGAAATT CGAATATCGG CGCGGCTTCA AGTTCTCGAC GTATGCGACG
TGGTGGATTC GTCAGGCGAT TTCGCGCGCG ATCGCGGATC GCGCTCGCAC GATCCGCGTA
CCGGTTCACG TCGGCGACGA AGCGCGCCGC GTGCGCAAGG TCGCCGATCG GATCGAGCGG
CGCAGCGGCG CGCGCGCATC GCTTGCCGAA CTGTCGGAGG CGACCGGGCT GTCGGCCGAG
CGGCTGCGCG CGGTGCTGAT GCTGCCTCGC GAGCCGCGCT CGCTGAACGC GCCGCTCGGC
GATGACGACC AGGCCGAATT CGGCGACATC GTCGAGGATG CGTCGACGCC GAGCCTGTTC
GATGCGCTCG CTCAAGGGCA AATGTGCGAC GTCGTCACGT CGCTGCTGAA GACGATGTCC
GCGCAGGAAG CCGACATCCT GCGCCGGCGC TTCGGCATCG GCGGCGACGA GCCGTGGAGC
TATGAGCAGA TCGCGGCACA GGCGGGCGTG TCGCGCGAGC AGATTCGCCG CATCGAGAAA
CGCGCGCTGC AAACGCTGCG CATCACCGCC GACGCATGCA ACGCGCGCGA CTTCCTCGAC
GCGCAGCCGT AA
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| Protein sequence | MKVSEREVRY EQGIDRLLEL ACARDDTEYA ELADEFASAP SDTHAHAHDL GEPEFLDRHA
SDESAGTGSF GDKPTRAAHA DADWHDGDVV DAQSSEPSDA TPDDTAVSTD PLALFVRRMH
AVPLLTHAQE IALATEIEAG REQVLQALAE TLDLLELASL PDDPALGRAR AALQRARARG
DEGARAFARA RKAAYAALAA HGWPSAEIDA MRRAMRRLPT PPEQGDAGAL PAFADGEARI
SAATARMAEA NLRLVLSIAR KYASRGLDLA DLLQEGNLGL LRAIEKFEYR RGFKFSTYAT
WWIRQAISRA IADRARTIRV PVHVGDEARR VRKVADRIER RSGARASLAE LSEATGLSAE
RLRAVLMLPR EPRSLNAPLG DDDQAEFGDI VEDASTPSLF DALAQGQMCD VVTSLLKTMS
AQEADILRRR FGIGGDEPWS YEQIAAQAGV SREQIRRIEK RALQTLRITA DACNARDFLD
AQP
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