| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I0009 |
|---|
| Symbol | gspF |
|---|
| ID | 3848738 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007651 |
|---|
| Strand | + |
|---|
| Start bp | 12080 |
|---|
| End bp | 13297 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637839682 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_440569 |
|---|
| Protein GI | 83721515 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCCT TCCGTTTCGA AGCGATCGAC GCGTCGGGGC GCGCGCAAAA GGGCGTCATC
GAGGCCGACA GCGCACGCAA CGCGCGCGGC CAGCTGCGCA CGCAGGGGCT CACGCCGCTC
GTCGTCGAGC CGGCCGCGAG CGCGCAGCGC GGCGCGCGCA GCCAGCGTCT CGCGCTCGGC
CGCAAGCTGT CGCAGCGCGA GCAGGCGATC CTGACGCGCC AACTGGCGAG CCTGCTCGTC
GCCGGGCTGC CGCTCGACGA GGCGCTCGCC GTGCTGACCG AGCAGGCGGA GCGCGACTAC
ATTCGCGAGC TGATGGCGGC GATCCGCGCC GAAGTGCTCG GCGGCCATTC GCTCGCGAAC
GCGCTCACCC AGCATCCGCG CGACTTCCCG GAGATCTACC GCGCGCTCGT CGCGGCGGGC
GAGCACACCG GTAAGCTCGG CATCGTGCTG TCGCGGCTCG CCGATTACAT CGAGGAGCGC
AACGCGCTCA AGCAGAAGAT CCTGCTCGCG TTCACGTATC CGGCGATCGT CACGGTGATC
GCGCTAGGCA TCGTCACGTT CCTGCTGAGC TACGTGGTGC CGCAGGTCGT CAACGTGTTC
GCGAGCACGA AACAGCAGTT GCCGCTGCTT ACGATCGTGA TGATGGCGCT GTCCGATTTC
GTCAGGCACT GGTGGTGGGC GATCCTGATC GGGATCGCGG CCGTCGTCTA CCTGGTGAAG
GCGACGCTGT CGCGCGACGG CCCGCGCCTC GCGTTCGATC GCTGGCTGCT GACCGCCCCG
CTCGCGGGCA AGCTCGTGCG CGGCTACAAC ACGGTGCGCT TCGCGAGCAC GCTCGGCATC
CTGAGCGCGG CGGGCGTGCC GATCCTGCGC GCGCTGCAGG CGGCGGGCGA GACGCTGTCG
AACCGCGCGA TGCGCGGCAA CATCGAGGAC GCGATCGTGC GCGTGCGCGA GGGCTCGGCG
CTGTCGCGCG CGCTGAACAA CGTGAAGACG TTTCCGCCCG TGCTCGTGCA CCTGATCCGT
TCGGGCGAGG CCACGGGCGA CGTGACGACG ATGCTCGATC GCGCGGCCGA GGGCGAATCG
CGCGAGCTCG AGCGGCGCAC GATGTTTCTC ACGAGCCTGC TCGAGCCGCT GCTGATTCTC
GCGATGGGCG GCATCGTGCT CGTGATCGTG CTCGCGGTGA TGCTGCCGAT CATCGAGCTC
AACAACATGG TGCAGTGA
|
|---|
| Protein sequence | MPAFRFEAID ASGRAQKGVI EADSARNARG QLRTQGLTPL VVEPAASAQR GARSQRLALG
RKLSQREQAI LTRQLASLLV AGLPLDEALA VLTEQAERDY IRELMAAIRA EVLGGHSLAN
ALTQHPRDFP EIYRALVAAG EHTGKLGIVL SRLADYIEER NALKQKILLA FTYPAIVTVI
ALGIVTFLLS YVVPQVVNVF ASTKQQLPLL TIVMMALSDF VRHWWWAILI GIAAVVYLVK
ATLSRDGPRL AFDRWLLTAP LAGKLVRGYN TVRFASTLGI LSAAGVPILR ALQAAGETLS
NRAMRGNIED AIVRVREGSA LSRALNNVKT FPPVLVHLIR SGEATGDVTT MLDRAAEGES
RELERRTMFL TSLLEPLLIL AMGGIVLVIV LAVMLPIIEL NNMVQ
|
|---|
| |