Gene BTH_II1819 details

Gene Information

• Locus tag: BTH_II1819
• ID: 3846525
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia thailandensis E264
• Kingdom: Bacteria
• Replicon accession: NC_007650
• Strand: +
• Start bp: 2192912
• End bp: 2194867
• Gene Length: 1956 bp
• Protein Length: 651 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 637839120
• Product: sigma-54 activated regulatory protein
• Protein accession: YP_440013
• Protein GI: 83717601
• COG category: [K] Transcription; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG3284] Transcriptional activator of acetoin/glycerol metabolism

Plasmid Coverage information

• Num covering plasmid clones: 39
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGCAAT CTTCCGTGCT GCCCGCCGCG GCGAGCCGCG TCGACCTGCT CGCGCAAGCG 
CACGCCCGCT CGCTGTCGGT CGGCCTGCGC GCGTCCGAGC CGCCCGATTT CTCGCCGCTG 
TCGCGCACCG CTCTGCGCGA GCTGATCGAC GGCAGCCAAT CGCTGTACAC GCACGCGCGT 
CCGGTGATGG ACACGCTGCA CGCGCAGATC GCCGACACGC AAAGCCTCGT GCTGCTGACC 
GACCGCGACG GCGTGATCCT GCACAGCGTC GGCGACGCCG ATTTCGTCGA GAAGGCGAAC 
CGGGTCGCGC TCTGCCCCGG CGTGTCGTGG GCCGAGGACG CGCGCGGCAC GAATGCGATC 
GGCACCGCGC TGATCGCGGG CCAGGCGCTC GCCGTGCACG GCGCCGAGCA CTTCCTGCGC 
GCGAACCACG TGCTCACCTG TTCGTGCGCG CCAATCGTCG ATCCGTTCGG CCGCATCCTC 
GGCGCGCTCG ACGTGAGCGG CGACCCGCGG GGCTTCAGCC CGCATACGCT CGCGCTCGTG 
AAGATGTCCG CGCAGCTGAT CGAAAACCAC CTGTTCGCGA ACCAGTGCGC GGACGCGCTG 
CGCGTGCGCT TTCACGCGCA CGACGAATTC GTCGACTCGC TGTTCGCGGG CCTCGTCGCG 
TTCAGCCCGA GCGGCGCGCT GCTCGCCGCG AACCGCAGCG CGCAATTCCA GCTCGGCGCG 
AATCTCGACG CGCTGCAACA ACGCGGTTGC GACGAACTGT TCGGCCTGTC TTTCGCGAAG 
CTTGCGCAGC ATGCGGCGCG CGAGCCGCTC GCGTGCTTCA CGCTGACGCT CGGCACGGGC 
GTGCGCGTGC GCGCGCGCTG CGAATTCGCG GATGCGCAGC GCACGGCCGT TCCGGTGACG 
GCGCGCGTCA CGGCGCTCCG CGCCGCCGAA GCGACGCGCG ACGACGATCC CGACGCGATC 
ACGTTCGCGA CGCTCGACAC GGGCGACGCG CGGATGACCG CCGTCCTGCA GCGCGTCGGC 
AAGGTGCGCG GCCGGGACCT GCCGGTGCTC GTGCTCGGCG AGACCGGCAC CGGCAAGGAG 
TGGCTCGCGC GAGCGCTGCA TCACGCGTCG CCGCGCCGCG ACGGCCCGTT CGTCGCGGTC 
AACTGCGCGG CGCTGCCGGA TTCGCTGATC GAAGCGGAGC TGTTCGGCTA CGAGGACGGC 
GCGTTCACCG GCGCACGCAA GCGCGGCAGC CCCGGCAAGA TTGCTCAGGC GGACGGCGGC 
ACGCTGTTTC TCGACGAAAT CGGCGACATG CCGCTCGCGC AACAGGTCCG GCTGATGCGC 
GTGCTCCAGG AGCGCGCGGT GATGCCGCTC GGCGGAGCGC GCGCGGTGCC GGTGGACGTG 
CGGGTCGTCT GCGCGACGCA CCGCGATCTG CGCGCGATGA TCGCGGCCGG CACGTTTCGC 
GAGGATCTGT TCTACCGGAT CAACGGCCTG GCGGTCACGC TGCCGCCGCT TGCCGAGCGC 
TCGGATCTCG AGACGCTCGT CTCCCGCGTG CTCGCGCGGC TCGGTCGCGG CGAGCCGATG 
CCGGCGACGG TATCGGCGGC GGTGCTCGCC GCGTTCGCGC GCTGCCGGTG GCCGGGCAAT 
CTGCGTCAAA TGACGAACGT GCTGCGCACA GCGGGGATGC TCGCGGAAGG CGAAGCCCGG 
ATCGACGTCG AGCATCTGCC TGACGATTTC TGGCTCGACT GCCCCGCGCT CGCGCGGGAC 
GCGCAGGGGC GCACGGATGC CGCCGCGGCA GGCGCGACGA GGGCCGATAC GGCGGCGGCC 
CCCTGCGCTG CGGCGACGCT GCAGGACCAT CAGGCGGCGT TGATCGACGG CGCGCTCGAC 
CGGCATCGCG GCAACGTGTC GGCGGCCGCG CGCGAGCTCG GGCTCGCGCG CAACACCGTT 
TATCGGCACT TGCGTAGGCG GCGGACGGGG ACGTGA 

 

Protein sequence

MPQSSVLPAA ASRVDLLAQA HARSLSVGLR ASEPPDFSPL SRTALRELID GSQSLYTHAR 
PVMDTLHAQI ADTQSLVLLT DRDGVILHSV GDADFVEKAN RVALCPGVSW AEDARGTNAI 
GTALIAGQAL AVHGAEHFLR ANHVLTCSCA PIVDPFGRIL GALDVSGDPR GFSPHTLALV 
KMSAQLIENH LFANQCADAL RVRFHAHDEF VDSLFAGLVA FSPSGALLAA NRSAQFQLGA 
NLDALQQRGC DELFGLSFAK LAQHAAREPL ACFTLTLGTG VRVRARCEFA DAQRTAVPVT 
ARVTALRAAE ATRDDDPDAI TFATLDTGDA RMTAVLQRVG KVRGRDLPVL VLGETGTGKE 
WLARALHHAS PRRDGPFVAV NCAALPDSLI EAELFGYEDG AFTGARKRGS PGKIAQADGG 
TLFLDEIGDM PLAQQVRLMR VLQERAVMPL GGARAVPVDV RVVCATHRDL RAMIAAGTFR 
EDLFYRINGL AVTLPPLAER SDLETLVSRV LARLGRGEPM PATVSAAVLA AFARCRWPGN 
LRQMTNVLRT AGMLAEGEAR IDVEHLPDDF WLDCPALARD AQGRTDAAAA GATRADTAAA 
PCAAATLQDH QAALIDGALD RHRGNVSAAA RELGLARNTV YRHLRRRRTG T