| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II1383 |
|---|
| Symbol | |
|---|
| ID | 3844621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007650 |
|---|
| Strand | - |
|---|
| Start bp | 1634528 |
|---|
| End bp | 1635037 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637838685 |
|---|
| Product | ECF subfamily RNA polymerase sigma factor |
|---|
| Protein accession | YP_439579 |
|---|
| Protein GI | 83717850 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00102713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGGCA ACACTCTGCG TCTGCAGCGG GAGATCGCTG CGCTCTACAC CGGTCATCGC
GGCTGGCTGC ACGGCTGGCT GCAGAAGAAG CTCGGTTGCG GCGAGCGCGC GGCCGATCTC
GTCCACGACA CGTTCATCCG CCTGCTCGCG CGCGACGAGC CGATCGACGC GGCCGAGCCG
CGCGCGTTCC TGACGACCGT CGCGCAACGC GTGCTGTTCA ACCACTGGCG GCGCGAGCGG
CTCGAGCGCG CCTATCTCGA CGCGCTCGCG CGGCTGCCGG AGGCGGTCGC GCCGTCGCCG
GAGACGCGCG CGATCCTGTT CGAGACGCTC GTCGAGATCG ACCGGATGCT CGACGGGCTG
CCCGCCGCGG TCAGGCGTGC GTTCCTGCTC GCGCAGCTCG ACGGGATGAC GCACGCGCAG
ATCGCGGCCG AGCTTCGCGT GTCGCTCGCG ACCGTCAAGC GTTATCTGGT GAAGGCGGGC
GCGCAGTGCT ACTTCGCGAT CGCCGCATGA
|
|---|
| Protein sequence | MPGNTLRLQR EIAALYTGHR GWLHGWLQKK LGCGERAADL VHDTFIRLLA RDEPIDAAEP
RAFLTTVAQR VLFNHWRRER LERAYLDALA RLPEAVAPSP ETRAILFETL VEIDRMLDGL
PAAVRRAFLL AQLDGMTHAQ IAAELRVSLA TVKRYLVKAG AQCYFAIAA
|
|---|
| |