Gene BTH_II1286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBTH_II1286 
Symbol 
ID3846399 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia thailandensis E264 
KingdomBacteria 
Replicon accessionNC_007650 
Strand
Start bp1530903 
End bp1532534 
Gene Length1632 bp 
Protein Length543 aa 
Translation table11 
GC content71% 
IMG OID637838588 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_439482 
Protein GI83718331 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.556611 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATCGCT TCCCTCACGA TACGGCGGCG GTCCCGCGCC GTTGCCGCCG CCGCGCGCGC 
GGCGCTGCCC GCGCTTCGTG CGCCGCGTGC GCGTCGATCG CGCGCACGGC GGTTCGCGCC
GCCGCCGTCG CGGCCGCCCT CTTCGCCGCG GGCTGCACGC TCGCGCCGCG CTACGAGCGT
CCGGCCGCGC CCGTGTCGGG CGCGTTCCCG ACCGACGGCG TCTACGCCGC GCAGCCGGGC
GCCGCGGCCG GCGCGCGCAG CGCGAACGGC CAGGCGGCCG TCGACATCGG CTGGCGCGAG
TTCTTCGTCG ATCCGCGCCT GCAGCGGCTG ATCGAGATCG CGCTGAAGAA CAACCGCGAT
CTGCGCGTGT CGGTGCTCAA CGTCGAGGCG TCGCGCGCGC AGTATCGGAT CACGCGCGCG
GGCCTGTTCC CGACGCTCGA CGGCACCGGC ACGGGCACGA TCCAGCGCAC GCCGGCCGGT
GTGTCGGTAA CCGGCCAGCC GCTCATCTCG CGGACCTACA ATGTCGGCGT GTCCGCGTCG
TGGGAGCTCG ACCTGTTCGG CCGCGTGCAG AGCCTGAAGG ATCAGGCGCT CGCGCAATAC
TTCGCGACCG CGCAGGCGCG CAAGGCCGCG GAGATCTCGC TCGTCGCGAG CGTCGCCGAT
CAGTATCTGA CGCTGCTGTC GACCGACGAT CTGCTGCAGA TCACGGAGAA CACGCTGAAG
ACGGCGCGCG CGTCGTACGA CCTGACGAAG CTGCAGTTCG ACAACGGCAC CGGCTCGGAG
CTCGATCTGC GGCAGGCGCA GACGGTCGTC GAGACCGCGC TCGCGAACCA GCAGGCGCAG
GCGCGCGCCC GCGCGCAGGC GGTCAACGCG CTCGTGCTGC TGATCGGCGA GCCGCTGCCC
GACGATCTGC CGGCCGGCCT GCCGCTCAAT GCGCAGAATC TGCTGACCGA CATCCCGGCC
GGGCTGCCGT CCGATCTGCT GACGCGCCGC CCCGACATCA TGCAGGCCGA GGAGACGCTG
CGCGCGGCGA ACGCGAACAT CGGCGCGGCG CGTGCGGCGT TCTTCCCGAA AATCTCGCTC
ACCGGCGCGT TCGGCACCGC GAGCCCGACG CTCGGCGGCC TGTTCAAGGC GGGCACGGCG
GCGTGGTCGT TCGCGCCGAG CATCGCGCTG CCGATCTTCG AGGGCGGACA GAACATCGCC
AATCTCGATC TCGCGCACGT GCAGAAGCGC ATCGAGATCG CGAACTACGA GAAGGCGATC
CAGAGCGCGT TCCGCGAGGT GTCGGACGGG CTTGCCGCGC GCGGCACGTA CGATCAGCAG
ATCGCGGCGC TCGAGCGCAA CGAGCACGCG CAGCAGCGCC GCTACGATCT GTCGGACCTG
CGCTACAAGA ACGGCGTCGA CAGTTATCTG TCGGTGCTGA CCGCGCAGAC GGATCTGTAT
TCGGCGCAGC AGCAACTGAT CAGCGCGCGG CTCGCGCGCT GGACGAACCT CGTCGATCTG
TATCGCGCGC TGGGCGGCGG CTGGATCGAA CGCGCGGGCG AGACGCCGCG CCCGGCGGAT
GCGCCTGTCG ACTACGGCAA GGCGGCAGCG CCTGCGCCGG CGTCGGCGCG AACAGCGGCC
GAGATTGGTT GA
 
Protein sequence
MHRFPHDTAA VPRRCRRRAR GAARASCAAC ASIARTAVRA AAVAAALFAA GCTLAPRYER 
PAAPVSGAFP TDGVYAAQPG AAAGARSANG QAAVDIGWRE FFVDPRLQRL IEIALKNNRD
LRVSVLNVEA SRAQYRITRA GLFPTLDGTG TGTIQRTPAG VSVTGQPLIS RTYNVGVSAS
WELDLFGRVQ SLKDQALAQY FATAQARKAA EISLVASVAD QYLTLLSTDD LLQITENTLK
TARASYDLTK LQFDNGTGSE LDLRQAQTVV ETALANQQAQ ARARAQAVNA LVLLIGEPLP
DDLPAGLPLN AQNLLTDIPA GLPSDLLTRR PDIMQAEETL RAANANIGAA RAAFFPKISL
TGAFGTASPT LGGLFKAGTA AWSFAPSIAL PIFEGGQNIA NLDLAHVQKR IEIANYEKAI
QSAFREVSDG LAARGTYDQQ IAALERNEHA QQRRYDLSDL RYKNGVDSYL SVLTAQTDLY
SAQQQLISAR LARWTNLVDL YRALGGGWIE RAGETPRPAD APVDYGKAAA PAPASARTAA
EIG