| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II0117 |
|---|
| Symbol | |
|---|
| ID | 3845268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007650 |
|---|
| Strand | + |
|---|
| Start bp | 134305 |
|---|
| End bp | 137124 |
|---|
| Gene Length | 2820 bp |
|---|
| Protein Length | 939 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637837423 |
|---|
| Product | outer membrane usher protein |
|---|
| Protein accession | YP_438319 |
|---|
| Protein GI | 83716782 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTCCGAG CATCAAGTGG AGAGACGTCG AAGCAAGATC GTGATGGCGG GTCGCGACTG
TTGCGCCGCC GCCAGATCAT GATCGCCGCT GGAGCCGTCG CATGCGGCGT TGGATCGCTG
TGCATGCCGG TCGATGCGGC GGAATTCGAC GGCACGCGGA TTGACGAACA TTCGCGCTCG
GATGCAATGG GGGCGGCGTT GTTGGACGCA GCGCCGACAC AGCATGACCG TAAGGCCTTG
CTGGTCGCGT CGCATGCGTC GCCGTCGGCG CCGACGACGG TCTCGTTCAA TTCGCGCCTG
CTCATGAGCG GTGGAATCGA TCTGTCGCGC TTCGAGCGAG GCAATCCCGT GGTGGCTGGC
ATCTACCCGG TCGACGTGAC GGTCAACGGC GAAAGACGCG GACGGATGGA CGTCGAGTTT
CGCGACGTTC GCGGCCGCGA CAGCGCGGCG CCATGCTTTA CGCGCGCGAC GCTGGACCGG
CTCGGCGTGG AGGGGGACCT CGTCGTCAAG CGTCTCGACG CCGCGCGCGG GGTGACGGGC
GAGCAATCGG GCCGGCCGCC GGCGATTGCC GAGAGCGCCT GCATCGGCTT GCACGATGCG
CTGCCTGACG CGACGTATAC GCTCGACACA GCCGATCTCA CGCTCGAACT GACCATCCCG
CAGGTGGACA TGCGCAAGAC CGCGCGCGGC TATGTGGACC CGTCCCGGTG GGACAACGGC
GTCAACGCGG GCCTTCTGCA GTACAACCTC AGCGGCTACG CAAGTGAAAA CAAGTTCTTC
GGAAGTGGCA CGAGCAGCCT CTTTCTCGGC TTGCAAGCCG GCGTGAATAT CGGGGCCTGG
CGCGTTCGCC AACGTTCGAA CCTGATGTGG GGAAACCGCA GCGCCGGCAT GAGTTGGCGC
AGTCTCGAAA CCTACGTTCA ACGGGACATC ACGGCACTGC GCAGCCAGAT CACGCTCGGC
GACAGTTACA CGACCGGCGA GATCTTCGAG TCGTTCGGCG TGCGCGGCGT GCAGTTGGCA
AGCGACGACC GGATGCTGCC GGTCTCGCTG CAGTCCTACG CGCCGACGAT TCGCGGCATC
GCGGATACGA ACGCGCGCGT GGCCGTGCGA CAGCGCGGCA ACGTGATCTA CGAGGCCAGC
GTTCCGCCCG GACCGTTCGA ATTCGACGAT TTGCCGCCGA CCGGCTACGG CGGCGATCTC
GACGTGACGA TCACCGAATC GGACGGCAGG ACGAAACAAT TCACCGTGCC TTTCGCATCG
GTACGTCAAC TCTTGCGGCC CGGCATGCAA CGTTTCAACT TCACCGTCGG TCAGTATCGA
GATGCGCTGT CGAACGGCAA GCCGTGGGTT GCGCAGCTGA CCTATCAGCG CGGCCTGACG
AATTTGCTGA CCGGCTATGC AGGTCTGCTG TCGTCGACGG GTTACGCGTC CGGCTTGATC
GGCGTTGCGC TCAACACGCC GATCGGCGCG TTTGCTTTCG ATGTCACGTC CGCGCGCACC
AGCTTGCCCG GGCAAGGCGC GCGCAACGGA TTCAGCTCGC ATGTGTCGTA CAGCAAGATG
GTGCCATCCA CCGGGACCAA CTTCTCGATG GCGGCGTACC GATATTCGAC GGCGAATTAC
TACAGCCTCG CCGACGCCGT CATCGCGCGC TACGGCTACA ACGCGGAAGA ACGCGCATGG
CGAAACGATT ACCGGGCCCG CACTCGCTTG CAGTTGAACG TCAATCAGCG GATCGGAGAC
CGAAGCTCCG CCTATGTTTC CAGCAGTCTG CTGAATTACT GGAACGGCCG AGGAAGGGAC
ATTCAGTTTC AGGCAGGCTT TTCAAGCGTC TTCAAGCGCG TCTCGTACAC GGTCTACGCA
CAGCGCAGCC GCTCGAGCGA CGATCGCACC GTGACACAGG TCGGCGTGAA TCTGTCGATT
CCGCTCGGCG GCGGCGCTTA TACGACGAGA AATGCGTTTA GTTCGCTGAC GACTTCGCTG
TCGCGCGCGT CCAACGGCGA CAGTTCGGTT CAGGCAAATC TGTCGGGCAG CACGGCGCAC
GTGGTGCCGA TCGACTACGG CGTCAACGTG TCGCGCTCGG TGAGCGGCGA CAGCAATTCC
GCATCGCTCG GGGTCTACGG CACGTATCGC TCGCCGTTCG GCACTTACAG CGGCAACGCA
TCGGTCGACA ACCGGGCCCG CCAGGCGTCG TTCGGCGCGA ACGGCGCGGT GGTCCTGCAT
CGCGGCGGCG TGACGTTGAG TCCGCCGCTC GGACCGGCGG CGGCGCTCGT CGAGGCGAAA
GGCGCGAAAG GCGGCAGGCT GATCAACGGG CAGGGCGCGA CGATCGATCG CTTCGGCTAC
GCGGTGATTC CTTCGTTGAT GCCTTACCGG GCCAACACCG TCGCCATCGA TCCGTCCGAG
CTGCCGGACG ACGTCGAGCT CGCGAATACG AGCGAGGAGG TCGTGCCTCG CAACAATTCG
ATCGTCTTCG TGAAGATGGA AACCAAGCGC GGCAGGCCCG TCTTCGCCGC GACCGAAACC
GAAGACGGCA AACCCTTGCC GATGGGGAGC GAGCTGTTCG ACGTCGACGG CAAGTCGCTC
GGCGGCGTCG GGCAAGGCGG AATGGCGTTT CTGCGCGGTC TCGAGGGCTC CGGCAATCTG
GTCGCGAAGT GGGGGACGGG TTCGTCCGAG CAATGCACGA TGCCTTACGC GGTGCCGGTG
GACCAAGCGG AAGCGAAAAA GTCCCGGGCG ATCGTTCGTA TCCGTTTGCG TTGCGAGCCG
CAGTTGCGCG CCGAAGCGAG CCAGACATCG GACGGCGACG GCGAAACACG GAATGATTGA
|
|---|
| Protein sequence | MVRASSGETS KQDRDGGSRL LRRRQIMIAA GAVACGVGSL CMPVDAAEFD GTRIDEHSRS
DAMGAALLDA APTQHDRKAL LVASHASPSA PTTVSFNSRL LMSGGIDLSR FERGNPVVAG
IYPVDVTVNG ERRGRMDVEF RDVRGRDSAA PCFTRATLDR LGVEGDLVVK RLDAARGVTG
EQSGRPPAIA ESACIGLHDA LPDATYTLDT ADLTLELTIP QVDMRKTARG YVDPSRWDNG
VNAGLLQYNL SGYASENKFF GSGTSSLFLG LQAGVNIGAW RVRQRSNLMW GNRSAGMSWR
SLETYVQRDI TALRSQITLG DSYTTGEIFE SFGVRGVQLA SDDRMLPVSL QSYAPTIRGI
ADTNARVAVR QRGNVIYEAS VPPGPFEFDD LPPTGYGGDL DVTITESDGR TKQFTVPFAS
VRQLLRPGMQ RFNFTVGQYR DALSNGKPWV AQLTYQRGLT NLLTGYAGLL SSTGYASGLI
GVALNTPIGA FAFDVTSART SLPGQGARNG FSSHVSYSKM VPSTGTNFSM AAYRYSTANY
YSLADAVIAR YGYNAEERAW RNDYRARTRL QLNVNQRIGD RSSAYVSSSL LNYWNGRGRD
IQFQAGFSSV FKRVSYTVYA QRSRSSDDRT VTQVGVNLSI PLGGGAYTTR NAFSSLTTSL
SRASNGDSSV QANLSGSTAH VVPIDYGVNV SRSVSGDSNS ASLGVYGTYR SPFGTYSGNA
SVDNRARQAS FGANGAVVLH RGGVTLSPPL GPAAALVEAK GAKGGRLING QGATIDRFGY
AVIPSLMPYR ANTVAIDPSE LPDDVELANT SEEVVPRNNS IVFVKMETKR GRPVFAATET
EDGKPLPMGS ELFDVDGKSL GGVGQGGMAF LRGLEGSGNL VAKWGTGSSE QCTMPYAVPV
DQAEAKKSRA IVRIRLRCEP QLRAEASQTS DGDGETRND
|
|---|
| |