| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3393 |
|---|
| Symbol | |
|---|
| ID | 3836845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 3910206 |
|---|
| End bp | 3912161 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637827514 |
|---|
| Product | penicillin-binding protein 1A |
|---|
| Protein accession | YP_428474 |
|---|
| Protein GI | 83594722 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGCA GACCCCAAAC AGACCGCATG GCGCCCGTTT TCGAGGCCTC CGCCCCCTCC
CGCCCGCCGC TGATCGCCGA GCGGGTGGTG CCGGAGCTAA GCGACGACGC GCCCCGACGC
GCCGCCCCCT CGCCGCGCCC GCCGCCCCGT CGCCGCAAGC CCGGTCGCTC ACCGGCGCGC
AAGGCGCCGC GCCGGCCGCG GCGGCGGTGG GTTTGGCCGC TGATCCGCCT GATGCTGGTC
GGGGTGATCT GGATGGTGAT CGGTCTGGCC GGGGTGGTCG TATGGTTCGG CCATGACCTG
CCCGACCCGG TGACGTCGGC CAATGTGACG CGGCGGCCCT CGGTGACGCT GCTTGCCGCC
GATGGCAGCC AATTGGCCTC CTTTGGCGAT ATCCAGGGCG ATACCGTGCG CACGAGCGAC
GTGCCCCGCG CCCTGGTTCT GGCGATTCTC GCCACCGAGG ACCGGCGGTT CTTCAAGCAT
TTCGGCCTGG ATCTGGTGGG TATCGCCCGC GCCAGCGTGG TCAACCTGCG GGCGGGGCGG
GTGGTCCAGG GCGGATCGAC GCTCACCCAG CAGGTCGCCA AGAACCTGTT CCTGACCCAC
GACCGCACCT TCAAACGCAA GATCCAGGAG GTCTTGCTGG CGCTGTGGCT GGAACAAACC
TTCACCAAGG ACCAGATTCT CAGCCTTTAT CTCAACCGCG TTTATCTGGG CGCGGGCACC
CACGGCGTCG ATGCGGCGGC GCGGCGCTAC TTCGACCAGC CGGTGGGGCA GATCAATCTT
TACCAAGCGG CGTTGCTGGC CGGGCTGCCC AAGGCGCCCT CGCGCCTGAA CCCGGTGACC
AATCCCGACG GATCGCGGGT TCGCACCCTT CAGGTGCTGC AAAACATGGT CGAGGCCAAG
ATGATCACCC CGGCCCTGGC CAAACAGGCC GCGGCCTTGG CCGACGGGGC GATTCCCGGC
GCCCGGCGCG GCGGCATGGG CAGTTATTTC GCCGATTGGA TCCTTGAGCG CGTCGATGAT
TTCGCCGGCC CCCGCGACCG CGATCTGATC GTGCGAACCA CCCTTGATCC GGTGCAGCAG
CGCTCGGCCG AGGCGGCGGT GGCCGGGCTG CTCGCCGAAA AAGGCGCGGC GATGAAGGCC
AGTCAGGCCG CCCTGGTCGC CCTCGCCCCC GATGGCGCGG TGACGGCGAT GGTGGGGGGG
CGCGATCACG CGACCAGCCC GTTCAACCGG GCGGCCCAGG CCCGCCGCCA GCCGGGCAGC
GCCTTCAAGC CCTTCGTCTT TCTGGCGGGG CTGGAAGCTG GGCTGACGCC CTCGACGATG
ATGGACGACG CGCCGATCAC GGTGAACGGC TGGTCGCCGG GCAATTACAA GGACAAATAC
AAGGGGCGGG TCAGCCTGAC CCAGGCCTTC GCCCAGTCGC TCAATACGGT GGCGGTGCGG
GTGAGCGAAA CCGCCGGGCG CGGCGCCGTG GTCAAGGTCG CCCATCGCCT GGGGGTTATC
GGATCGCTCT CGCCCCTGCC CTCGATCGCG CTCGGCGTCT TCGAGGTCTC GCCGCTGGAT
CTGACGGCGG CCTATGCCCC CTTCGCCAAC GGCGGTTATG CGGTGGTGCC CCACGGCATT
CTGAGCATCG CCGATCGCGA TGGCGGCCTG CTCTATGAAC GCCAGGACAG CGGGCCGCGC
CGGGTTGTGG CGCCCGAACT CGCCCGGTCG ATGGATACGA TGCTAGGCGC CGTGGTGTCC
TGGGGAACCG GACGGGCGGC GGGGCTGCCC GATCGCACGG CGCGCGGCAA GACCGGAACC
AGCCAGGGAT ACCGCGACGC TTGGTTCGTC GGCTATGCCG GCAAAACCCT GGCCGGAGTC
TGGGTCGGCA ATGACGATGG CACGCCGATG CGCGATGTCA CCGGCGGTAT TCTGCCCACG
CAGATCTGGC ATGCCTTCAT GCTGAACGCC CCGTAA
|
|---|
| Protein sequence | MARRPQTDRM APVFEASAPS RPPLIAERVV PELSDDAPRR AAPSPRPPPR RRKPGRSPAR
KAPRRPRRRW VWPLIRLMLV GVIWMVIGLA GVVVWFGHDL PDPVTSANVT RRPSVTLLAA
DGSQLASFGD IQGDTVRTSD VPRALVLAIL ATEDRRFFKH FGLDLVGIAR ASVVNLRAGR
VVQGGSTLTQ QVAKNLFLTH DRTFKRKIQE VLLALWLEQT FTKDQILSLY LNRVYLGAGT
HGVDAAARRY FDQPVGQINL YQAALLAGLP KAPSRLNPVT NPDGSRVRTL QVLQNMVEAK
MITPALAKQA AALADGAIPG ARRGGMGSYF ADWILERVDD FAGPRDRDLI VRTTLDPVQQ
RSAEAAVAGL LAEKGAAMKA SQAALVALAP DGAVTAMVGG RDHATSPFNR AAQARRQPGS
AFKPFVFLAG LEAGLTPSTM MDDAPITVNG WSPGNYKDKY KGRVSLTQAF AQSLNTVAVR
VSETAGRGAV VKVAHRLGVI GSLSPLPSIA LGVFEVSPLD LTAAYAPFAN GGYAVVPHGI
LSIADRDGGL LYERQDSGPR RVVAPELARS MDTMLGAVVS WGTGRAAGLP DRTARGKTGT
SQGYRDAWFV GYAGKTLAGV WVGNDDGTPM RDVTGGILPT QIWHAFMLNA P
|
|---|
| |