| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3356 |
|---|
| Symbol | |
|---|
| ID | 3836808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 3868216 |
|---|
| End bp | 3869472 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637827477 |
|---|
| Product | polyhydroxyalkanoate depolymerase |
|---|
| Protein accession | YP_428437 |
|---|
| Protein GI | 83594685 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
|---|
| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.407835 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTATA ATCTTCATGA AATCCAGCAT GCCGCGCTGA TGCCCTGGCG CGTGGCCGCA
CACTCGGTCC ATACCCTTTA CACCTGTCCG TGGGTGCCGG CCTCTTATAC CAAGATGGGG
CGCTCGATCG CCGCCGGGGC GGCCGTTTTC GAGCGGGTGA CGCGGCGCTA TGGCAAGCCG
CGCTTCGGTC TCGATCACAC CGTCGTGGCC GGCGAAAGGG TGTGGGTCGA GGAGATCACC
GTCCACGACC TGCCGTTCTG CGATCTGGTC CATTTCACGC GCGGCTGCCC CGAGTCGGTC
AAACAGCCCC GCCTGCTTGT CGTCGCCCCG CTTTCGGGCC ATTACGCCAC CTTGCTGCGT
GGCACGGTCG AGGCCTTGCT GCCCGATCAC GATGTTTATA TCACCGATTG GATCAACGCC
CGCGAGGTGC CGATCGAAGA GGGCGCCTTC GGCTTTGACA CCTATGTCGA CTACCTGCGG
GCCTTCCTCA CCTTCCTCGG CCCCGATACC CACCTGTTGG CGGTTTGCCA ACCCAGCGTG
CCGGTGCTGA CCACGGCGGC GCTGATGGCC GAGGACGGCG ACGCCTGCCG GCCGCTGTCG
ATGACGCTGA TGGGCGGCCC GCTCGATACC CGGATCAATC CGACCGAGGT CAACCGCTTC
GCCGACAGCC ACGACATGGC ATGGTTCGAA AAGAAGCTGA TCCACACGGT TCCCGCCCCC
TATCTGGGGC GTGGCCGTAA GGTCTATCCG GGATTTCTGC AGCTTTCGGG CTTCATGGCG
ATGAACTTCG ATCGCCATGT GAACGCCCAT CTCGACTACT TCACCCATTT GATCGAGGGC
GATGGCGACA GCGCCGACCA GCATCGGGAT TTCTACGACG AATATCTGTC GGTCATGGAT
CTGCCGGCGG AATTCTACCT TGAGACGGTC GAGCGCATCT TCAAGAACCA CGAATTGGCC
GAGGGCAAGC TGGTGGTGAA CGGCCGGCGG GTGGATACGG GGGCGATTAC CGATATCAGG
CTCTTGACCA TCGAGGGGGA ACGCGACGAT ATCACCGGCA AGGGCCAGAC CGCAGCGGCC
CACACTTTAT GCGCCAATCT GCCCCAGGCC TTGCGTGACC ATCGCCTTCA GCCCAAGGTG
GGGCATTATG GCATCTTCAA CGGGCGCCGT TGGCGCGAGG AGATCCTCCC CCATGTCCGT
GCGTTCATTC TTGAAGCGGA GCGCGGCGGT GCCAGCCGCG GCGCCGCTGT CGCCTGA
|
|---|
| Protein sequence | MLYNLHEIQH AALMPWRVAA HSVHTLYTCP WVPASYTKMG RSIAAGAAVF ERVTRRYGKP
RFGLDHTVVA GERVWVEEIT VHDLPFCDLV HFTRGCPESV KQPRLLVVAP LSGHYATLLR
GTVEALLPDH DVYITDWINA REVPIEEGAF GFDTYVDYLR AFLTFLGPDT HLLAVCQPSV
PVLTTAALMA EDGDACRPLS MTLMGGPLDT RINPTEVNRF ADSHDMAWFE KKLIHTVPAP
YLGRGRKVYP GFLQLSGFMA MNFDRHVNAH LDYFTHLIEG DGDSADQHRD FYDEYLSVMD
LPAEFYLETV ERIFKNHELA EGKLVVNGRR VDTGAITDIR LLTIEGERDD ITGKGQTAAA
HTLCANLPQA LRDHRLQPKV GHYGIFNGRR WREEILPHVR AFILEAERGG ASRGAAVA
|
|---|
| |