Gene Rru_A3178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A3178 
Symbol 
ID3836624 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand+ 
Start bp3670243 
End bp3670728 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content69% 
IMG OID637827293 
ProductHolliday junction resolvase YqgF 
Protein accessionYP_428260 
Protein GI83594508 
COG category[L] Replication, recombination and repair 
COG ID[COG0816] Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 
TIGRFAM ID[TIGR00250] RNAse H-fold protein YqgF 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.825708 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCATCT GTTCTTTGCA AACCTTTGCC GACGCCCTGC CCCCCGGTCG CCCGGTGCTC 
GGGCTTGACC TGGGCACCCG CACCATCGGC GTCGCCACCA GCGATGTCCG CCTGACCCTG 
GCCACGCCGA TCATCACCAT CAAGCGCCGC AAGTTCACCT TGGATGTCCA GGAGTTGTTC 
GCCCTTGCCG ATGGGCGGGC GGCGGCCGGG CTGGTGCTTG GCCTGCCCGT CGAGATGGAC 
GGCAGCGAGG GACCGCGCTG TCAGGCGACC CGCGCCTTCG CCCGCAATCT GCTGGCCTTG 
CGCGATCTGC CGGTGCTGCT GTGGGATGAA AGGCTGTCGA CCGCCGCCGT CAACCGCTTC 
CTGGTCGGCG AAGCCGATAT GACCCGGGCA CGGCGCGCCG AGGTCGTCGA CCGGGCGGCG 
GCGGCCTATA TCCTGCAAGG CGCCCTCGAC GCCCTGGATC GTCAGCGCCC CGAACAGGCG 
TTTTAG
 
Protein sequence
MPICSLQTFA DALPPGRPVL GLDLGTRTIG VATSDVRLTL ATPIITIKRR KFTLDVQELF 
ALADGRAAAG LVLGLPVEMD GSEGPRCQAT RAFARNLLAL RDLPVLLWDE RLSTAAVNRF 
LVGEADMTRA RRAEVVDRAA AAYILQGALD ALDRQRPEQA F