| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3074 |
|---|
| Symbol | |
|---|
| ID | 3836520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 3539235 |
|---|
| End bp | 3540776 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637827189 |
|---|
| Product | glycosyltransferase |
|---|
| Protein accession | YP_428156 |
|---|
| Protein GI | 83594404 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0020891 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCTC CCTGGATCCA ATGCGCCACG GGAACGGCCG ATCGCGGCCG GGCGCTGTTG
TATTCCCGCT GGGTCGGGCT GGCGGTGCTC TGCCTGCTGT GCCTCGTCCG CCTGTTGCTG
AGCGCCGGCG GCACCATCCC CCCCCATCCC GACGAAGCGA TGCTCTGGGC CGCCGGTCAG
CCGTTGGGGG CCGTCCTGGG CGGCGACCAC CCTTTGGTTT CGCTGATCCT GTCGGCCAGC
GTCGAGCTTC TGGGCAATAC GGTTTTCGCC CTGCGCGCCC CCGGGGTGAT CGCCCTTGGC
CTTGCCAGCA TCGCCGTCTG GCGGCTGGCC GGGCTGCTCT ATGACGCCCG GGTGGCTTTT
TGGGCCGCCG TGGTCTTCGC CACCCTGCCG GTGGTCTCCT ATGCCTCGGC CATCGCCGGA
ACGGCGGGGT TCCTGCCGCT GTTCTGGGCG GTGGCCCTGC ATGGGCTGCT GCGCGGCCTG
AAGAGCGATT CCCTGGTTTG GTGGCTTGTT TTGGGCACGG CCTTCGGGCT TGGCCTGTTG
ACCGACGGGG CGATGGCGCT TTTGGTGCCG TGCTTCCTGC TCTATGGCCT GCTGTCGCCC
GAATACCATG CCCTGTGGCG GCGCCGGGGC CTGTGGCTGG CTTTGGGTCT GGGCTTGGCG
ATCGCCGCCC CCGCCTTTTG GGCCGGTCTT CTGCACGCCG ATCTCACCCC CCAGCCGACG
CCGGCGGCGG GCTTCGCCTT CCTGGTGGCC CAGGTCGCGG TTTTCGGGCC AATTCCGGCC
ACCGTGCTGG CCTGGGTGGC GCTGCATCCC GGCGGCGGGG CGATGATCGG CGGATACGGG
CCCGGTGACG AGCGCCGCGC CGCCGACGAG CGGGCGCGGC GCGGCTATCG CATCCGGTTC
TTTCTGTCGT TCAGCCTGCC GGTGGTGGCC CTGGCCACCC TCGCCGCGGC GATGGGCGGC
GCCCTGCCGG CGGAGGCGGC GGCGGTGGCC TATGTCGGCG GCGCCATCCT GGTGGCCTCG
TGGCTGCTGA CGACGCCGTT GCGTCGCGGC CTGCTGCGGC TTTGCGTGGC GCTGCATATC
CTGGGCGCCC TGCTGTTCTT CAATCTGGAT GGCCTGCTGC GCGACAGCGG CCTGCGCCCG
CCCGCGGGGC TTGACCCCTT CGCCGATCTG CGCGGCATGG ACCGGGTGGC GGTTTGGGGC
GGTGAACTGG CGGCGCGCTA TCCCGGGGTG CCGATGATCT TCGATGACCC GGGCATTCTG
GCCAGCCTGC GCTTCCAGAG CCATCCCCGC TCCACCGTCA TGGTGCTGGC CAGCGCTCTG
GGCGGAGCGG ATGCCATCGG TTTGGGACCG GCGCCCAACG GCATTCTGGT GATCACCCGC
GCCCCGACCG GGCCCGATAC GCCCACTCCC GATACGCCCG CCGCCGATAC TTCCAATGAC
GAGGGCGGGC GCGATGCCGG CTTCGTTGAT ATCGAAGCCG TTCCCGGGCG GTGGATATCG
CTGCGCGCGC GCTTTCTGCC GCCCGCCGGA GAGCAACCAT GA
|
|---|
| Protein sequence | MDAPWIQCAT GTADRGRALL YSRWVGLAVL CLLCLVRLLL SAGGTIPPHP DEAMLWAAGQ
PLGAVLGGDH PLVSLILSAS VELLGNTVFA LRAPGVIALG LASIAVWRLA GLLYDARVAF
WAAVVFATLP VVSYASAIAG TAGFLPLFWA VALHGLLRGL KSDSLVWWLV LGTAFGLGLL
TDGAMALLVP CFLLYGLLSP EYHALWRRRG LWLALGLGLA IAAPAFWAGL LHADLTPQPT
PAAGFAFLVA QVAVFGPIPA TVLAWVALHP GGGAMIGGYG PGDERRAADE RARRGYRIRF
FLSFSLPVVA LATLAAAMGG ALPAEAAAVA YVGGAILVAS WLLTTPLRRG LLRLCVALHI
LGALLFFNLD GLLRDSGLRP PAGLDPFADL RGMDRVAVWG GELAARYPGV PMIFDDPGIL
ASLRFQSHPR STVMVLASAL GGADAIGLGP APNGILVITR APTGPDTPTP DTPAADTSND
EGGRDAGFVD IEAVPGRWIS LRARFLPPAG EQP
|
|---|
| |