Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A2275 |
Symbol | nikC |
ID | 3835703 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | - |
Start bp | 2633732 |
End bp | 2634631 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637826377 |
Product | nickel transporter permease NikC |
Protein accession | YP_427362 |
Protein GI | 83593610 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | [TIGR02790] nickel ABC transporter, permease subunit NikC |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0126063 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCATGC CTGATTGCCA GCAGGGGCAT CGCCCGCCAG ACGCCGCCCC GCTCCGGGGG TGGCTCGCCC GCCTGCCCAT CGGCCGAAGC TGGAGCCTGC GCTTGGCCCT TCTGGTGCTG GTCGCCCTGA TCGCCAGCGC CATCGTCGGC CAATCTCTGC TTCCCGGCGA TGCCAATGCC ATCGACCTCG CGGCGCGCTT GCGGCCGCCG TCTTGGGAGC ATTGGCTGGG CACCGATCAC CTGGGCCGCG ACATCTTTTT GCGGCTGCTC GCCGGGGCCG GCGTCTCGCT GGGCTCGGTC GCCCTGTGCC TCGCCCTGGT GCTGGCGATG GGGATCGCCG TGGGCGGCGC CGCCGGGGTC CTGGGCGGGC GCGCCGATCA GGCGATCATG CGCGTCACCG ATGTCTTCCT GACCTTTCCC ACCCTGGTGC TGTCGTTGTT CATGGTTGGC GTGCTGGGCA GCGGGCTGAC CAATGTCATC ATCGCCATCG CCTTGTCCCA TTGGGCTTGG TACGCCCGCA TCGTGCGCGG CATCGTTTTG TCGCTGCGCG AGCGCGATTT CATCCTGGCG GCGCGGCTGT CGGGGGCGGG GCGGGTCTCG ATCTTCGTCG AGCATCTGCT GCCCGCCACC GCCTCGCAGC TTCTGGTGCT GGCCAGTCTC GATATCGGCC ACATGATGCT CCATGTCGCC GGCCTGTCGT TCCTGGGATT GGGGGTCGCC CCGCCGATGG CCGAATGGGG GGTGATGATC AACGACGCCC GCCAGTTCGT CTGGACCCAG CCGATGCTGA TGGTCTGGCC CGGAGTGGCG CTTTTCGTCA GCGTCATGAC CTTCAACCTG CTTGGGGACG CCCTGCGCGA TCGTCTTGAT CCGCACCTCT GCGCGGAGCA TGGACATTGA
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Protein sequence | MTMPDCQQGH RPPDAAPLRG WLARLPIGRS WSLRLALLVL VALIASAIVG QSLLPGDANA IDLAARLRPP SWEHWLGTDH LGRDIFLRLL AGAGVSLGSV ALCLALVLAM GIAVGGAAGV LGGRADQAIM RVTDVFLTFP TLVLSLFMVG VLGSGLTNVI IAIALSHWAW YARIVRGIVL SLRERDFILA ARLSGAGRVS IFVEHLLPAT ASQLLVLASL DIGHMMLHVA GLSFLGLGVA PPMAEWGVMI NDARQFVWTQ PMLMVWPGVA LFVSVMTFNL LGDALRDRLD PHLCAEHGH
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