| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1676 |
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| Symbol | |
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| ID | 3835096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | + |
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| Start bp | 1965546 |
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| End bp | 1966634 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637825771 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_426763 |
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| Protein GI | 83593011 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.433168 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCCGT CCCCCGCGTT CCCCGTTTCC GATCCGCTGA TCATGCTGGC GCCGATGGCT
GGGGTAACCG ATTCCCCCTT CCGGCGACTG GCCCACGACT ATGGGTGTCC GCTATCGTGG
ACCGAGATGG TCGCCAGCCG CGAGCTGCTG CGCGAGCGGG CGCGGGGCGT CGATCCCCGG
CTGGGCGGCG GAGCGGAGGC CGGGCGGGCG GGCCCCTTCG CCGTGCAACT GGCCGGCTGC
GATCCGCTGA TCATGGCCGA GGCGGCGCGG CGGGTTGAAG GCGCCGGAGC CGAGCTGATC
GATATCAACA TGGGCTGCCC GGTGCGCAAG GTGGTGGGCG GCTTGGGCGG GTCGGCGCTG
ATGCGCGATC TGCCTTTGGC CGCGCGTATT CTCGAAGCCG TGGTCGGTGC CGTGACCCTG
CCCGTGAGCC TGAAGATGCG CCTGGGCTGG GATGACGCCA GCCGCAACGC GGTCGAGCTG
GCCCGGCTGG CCGAAAGCGC GGGGATCAGC CGGCTGACCG TCCATGGCCG CACCCGGGCC
CAGATGTATG ACGGTCGCGC CGACTGGCCG GCCATCGGTC TGGTCAAACG GGCCGTCTCG
CTGCCGGTCA TCGCCAATGG CGATGTGACG AACCTGTCCG AGGCCCGCGA GATCCTGGCC
GTTACCGGCG CCGATGGCGT GATGATCGGC CGGGCGGCCC TCGGCGCGCC CTGGTTGCCC
GGCGCCATCG CCCGGGCCAT CGCCGCCGGG ACGCGGGAAA CGCCGCCGCC GGCTTTGGCC
GAGAGGGCGG CGGTGATGGC CGCCCACCTC GAAGGCCTGT TGGCCTGCCA TGGTCTGGAG
CGTGGCCTTA AGACCTCGCG CAAGCATATG GGCTGGTATG CGCGGACGAT GCCGCAAGGC
GCCGACTTCC GCGCCGCCTA TATGGCCGCC GCCGATGCCG GGGCGGCGCG CCGAGTTCTC
AACCATTTCA CGGCGCTGTG GCAGTCGGCC CCGCCGTCCG CATCCCAAGA AAGCCGCCAA
AGAGCGGTCT TGAAAAACCC CACCCCGGAG GACACGTCAC CCGACCGCCC GCGAGAAGAG
GCCGCTTGA
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| Protein sequence | MTPSPAFPVS DPLIMLAPMA GVTDSPFRRL AHDYGCPLSW TEMVASRELL RERARGVDPR
LGGGAEAGRA GPFAVQLAGC DPLIMAEAAR RVEGAGAELI DINMGCPVRK VVGGLGGSAL
MRDLPLAARI LEAVVGAVTL PVSLKMRLGW DDASRNAVEL ARLAESAGIS RLTVHGRTRA
QMYDGRADWP AIGLVKRAVS LPVIANGDVT NLSEAREILA VTGADGVMIG RAALGAPWLP
GAIARAIAAG TRETPPPALA ERAAVMAAHL EGLLACHGLE RGLKTSRKHM GWYARTMPQG
ADFRAAYMAA ADAGAARRVL NHFTALWQSA PPSASQESRQ RAVLKNPTPE DTSPDRPREE
AA
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