Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A1605 |
Symbol | |
ID | 3835022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | + |
Start bp | 1893256 |
End bp | 1896558 |
Gene Length | 3303 bp |
Protein Length | 1100 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637825697 |
Product | Alpha amylase, catalytic region |
Protein accession | YP_426692 |
Protein GI | 83592940 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases [COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
TIGRFAM ID | [TIGR02456] trehalose synthase [TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGACT TCCTATGGTA CAAGGACGCC ATCGTCTATC AGCTTCATGT AAAAGCCTTT TTTGATTCGA ACGGTGACGG GTTCGGCGAT TTCAAGGGGC TGACCGAAAA GCTGGATTAC CTCTCCGATC TTGGGGTGAC GGCGGTGTGG ATCTTGCCGT TCTATCCCTC GCCGCTGCGC GATGACGGCT ATGACATCGC CGATTACAAG GCCATCCACC GCGCCTATGG CACCATGGGC GATTTCCGCC GCTTCGTGCG CGAGGCCCAT GAGCGCGGGT TGAAGGTCAT CACCGAACTG GTGATCAATC ACACCAGCGA TCAGCACGCC TGGTTCCAGC GCGCCCGCGA AGCCAAGCCC GGCAGCAAGG CCCGCGACAT GTACGTGTGG TCCGACACCG ACCAGCGCTA TTTGGATACG CGCATCATTT TCACCGATAC CGAAACCTCG AACTGGGCCT GGGATCCGCT GGCCAAGGCC TATTACTGGC ACCGCTTCTT CGCCCATCAG CCCGATCTCA ACTGGGACAA TCCGCGAATT TTCGAGGAGA TCACCCGGGT GATGAAGTTC TGGCTTGATT GCGGCGTCGA TGGCATGCGC CTGGACGCCA TTCCTTATTT GGTCGAACGC GACGGCACGA ATAACGAAAA CCTGCCCGAA ACCCATGTCG TCCTCAAGCG GCTGCGCGCT TGGCTTGATG CCCATTATGA AGACCGGATG TTCCTGGCCG AGGCCAATCA ATGGCCCGAG GACGTGCGCG AGTATTTCGG CGAAGCCGGC GACGAATGCC ACATGGCCTT CCACTTTCCG GTGATGCCGC GCATCTATAT GGCCGTGGCC CAGGAAGACC GCCATCCGAT CACCGATATC ATGCGCCAGA CCCCGGAGAT CCCAGCGGCT TGCCAATGGG CGATCTTCCT GCGCAATCAC GATGAACTGA CGCTCGAAAT GGTCACCGAC CGCGAGCGCG ACTATATGAA CACCTTCTAT GCCAATGATT CGCGGGCCCG AATCAACGTC GGCATCCGTC GGCGCCTGGC GCCTTTGCTT GATAACGATC GCCGCAAGAT CGAATTGCTC AACAGCCTTT TGATGTCGAT GCCGGGTACG CCGATCATCT ATTACGGCGA CGAGATCGGC ATGGGCGACA ATATTTTCCT GGGCGATCGC GATGGCGTGC GCACGCCCAT GCAATGGTCG CCCGACCGCA ACGGCGGCTT TTCGCGGGCC GATCCCGCCT CGCTTTATCT GCCGACGATC ATGGATGCGG TCTATGGCTT CTTCGCCGTC AATGTCGAGG CCCAGTCGCG CTCGCCATCC TCGCTGCTCA ACTGGATGCG CCGGCTGATC GCCGTGCGCA AGCGCCACCC CTCCTTCGGG CGCGGCACCT TGCGCTTTCT CTATCCCGGC AACCGCAAGA TCCTGGCTTA CTTGCGGGAA TTCGAGGGCG AGGTGATCTT GTGCGTGGCC AATCTGTCGC GTGCCCCGCA GCCGGCCGAA TTGGGGCTGG CCGAGTTTTC CGGGCGGGTT CCGGTCGAGA TGCTGGGCAA CAGCGTCTTT CCGCCGATCG GCGAGTTGCA CTATTTCATC ACCCTGCCGG CCTATGGCTT CTATTGGTTC CGCCTGTCGA AGGGCGAGGG GCCGAGCTGG CATGAACCGC CGGTCGAGCC CTTGCCCGAT CTTTCGACCC TGGTTCTTCC CCGTATCTGG GACAGCCTGG GCAGCGATGG GCCCTTGCGC CAGATCCAGG GGGATATCCT GCCGGCCTTC CTGCCCAAGC AACGCTGGTT CTCTGGCAAG GAGCATTCCC TGCGCGGCGT CGAGATGACC GACCACGCGG TGATTTCGGC CCCCGGCGCC GCTTCGGGCT GGATGCTCGC CCTGTGGCGC GCCGATTACA AGGATGGCGC CCCGGGGCAA ACCTTCCAAT TGCCCCTTGA TATCGCCTGG GAAAGTCGCG AGGACGATCC CTTGTCCCGG CTGCTGCCCT TTACCTTGGC CCGGGTGCGG CGGGTCAACC GCGTTGGCGC CCTCTATGAC GCCATGGCCG GCCCGGCTTT CCCGCTCGCC TTGGTGCAGG CGATGGCCGA AGGCGCGAAC GTGACGACGG CCAAGGGCGG CGGTTTGCGC TTCACCCGGA CCCAGGCCTT CCCCGCCGGC CCGCTTCCCG GCCCCGAAGC GGTGGCCCGC CTGGGGCGTG AGCAATCCAA CACCTCGATC AAACTTGGCG AGGATATGGT TCTCAAGCTC TATCGCCGGG TCGAGGCCGG GATTCATCCA GAAATCGAAA TCGGCCGCTT CCTGACCGAT GTCGCCGGCT TCGCCAACGC CCCGCCGCTG CTTGGCGCGC TCGAGCATAT CGATGCTAAG GGCGCCATCT CGGCCCTGGC GGTGCTGCAG GGCTTCGTGC GCAATCAGGG CGATGGCTGG GACTACATGC TGGCCTATCT CGACCGCTTC CTCGACGACA GGGCCCAGGC GCCGGCCGAG GTCGGCGAGG GCGGCGGGCC GGCCGGCTCG CCCCATGGCA TCATCCACGC CCAGGCCGAT ATCCTTGGCC AGCGCGTCGC CGAGCTTCAC CACGCCTTCG CCACCCCGAC CGAGGACCCG GCCTTTTCCG CCGAAGCCGT CGGGCCGGAG GATCTGGCGA GCTGGCGCGA GCAAGTGCGC ACCCAGGCGG CCCAGGCCCG TCAGGCCCTT GACACCGCCT TGCCCGGGCT GTCCGCAGAG GTGGCGGGGC TGGTCACCCG ACTGCTGGAC TGCTGGGAGC GGATCGACGC CCGCGTCGAC GCGCCGATTT CTTTGGCCGA GGGGCTGGTC AAAACCCGCA TCCATGGCGA CCTTCATCTG GGGCAGGTGG TGGTGGTGCG CGATGACTTC CATATTCTCG ATTTCGAGGG CGAGCCGGTG AAGGGACTGA GTGAGCGGCG CGACAAACAC TGCCCGTTGA AAGACGTGGC CGGCATGCTT CGCTCGTTCG ATTACGCGGC GTGGTCGGCG GCGCTGAGCT TCCGCCAAAC CCATGCCGAG GTGCGGATCG ACGTACTGCC CGCGCTTGGC GTTTGGCAGG AGGAAATCCG CGAGGCTTTC CTCGCCGGCT ATGACCGGGC CATCGCCGGA TGTCCCTCGG TTCCGGCCCT TGAGGAGGGG CGAAGGGACC TCCTTTCACT ATTCATGCTG GAAAAAGCCC TCTATGAGGT ATCTTACGAA GCCGCCAATC GTCCGGACTG GTTACGAATT CCCATCGGCG GCGTTTTGCG CCTGCTTGGA GAGGGGCCAT CGGACGAGAT CAAACCGCGT TGA
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Protein sequence | MSDFLWYKDA IVYQLHVKAF FDSNGDGFGD FKGLTEKLDY LSDLGVTAVW ILPFYPSPLR DDGYDIADYK AIHRAYGTMG DFRRFVREAH ERGLKVITEL VINHTSDQHA WFQRAREAKP GSKARDMYVW SDTDQRYLDT RIIFTDTETS NWAWDPLAKA YYWHRFFAHQ PDLNWDNPRI FEEITRVMKF WLDCGVDGMR LDAIPYLVER DGTNNENLPE THVVLKRLRA WLDAHYEDRM FLAEANQWPE DVREYFGEAG DECHMAFHFP VMPRIYMAVA QEDRHPITDI MRQTPEIPAA CQWAIFLRNH DELTLEMVTD RERDYMNTFY ANDSRARINV GIRRRLAPLL DNDRRKIELL NSLLMSMPGT PIIYYGDEIG MGDNIFLGDR DGVRTPMQWS PDRNGGFSRA DPASLYLPTI MDAVYGFFAV NVEAQSRSPS SLLNWMRRLI AVRKRHPSFG RGTLRFLYPG NRKILAYLRE FEGEVILCVA NLSRAPQPAE LGLAEFSGRV PVEMLGNSVF PPIGELHYFI TLPAYGFYWF RLSKGEGPSW HEPPVEPLPD LSTLVLPRIW DSLGSDGPLR QIQGDILPAF LPKQRWFSGK EHSLRGVEMT DHAVISAPGA ASGWMLALWR ADYKDGAPGQ TFQLPLDIAW ESREDDPLSR LLPFTLARVR RVNRVGALYD AMAGPAFPLA LVQAMAEGAN VTTAKGGGLR FTRTQAFPAG PLPGPEAVAR LGREQSNTSI KLGEDMVLKL YRRVEAGIHP EIEIGRFLTD VAGFANAPPL LGALEHIDAK GAISALAVLQ GFVRNQGDGW DYMLAYLDRF LDDRAQAPAE VGEGGGPAGS PHGIIHAQAD ILGQRVAELH HAFATPTEDP AFSAEAVGPE DLASWREQVR TQAAQARQAL DTALPGLSAE VAGLVTRLLD CWERIDARVD APISLAEGLV KTRIHGDLHL GQVVVVRDDF HILDFEGEPV KGLSERRDKH CPLKDVAGML RSFDYAAWSA ALSFRQTHAE VRIDVLPALG VWQEEIREAF LAGYDRAIAG CPSVPALEEG RRDLLSLFML EKALYEVSYE AANRPDWLRI PIGGVLRLLG EGPSDEIKPR
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