| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A0993 |
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| Symbol | |
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| ID | 3833552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | + |
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| Start bp | 1180876 |
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| End bp | 1182678 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637825082 |
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| Product | transcriptional regulator NifA |
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| Protein accession | YP_426081 |
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| Protein GI | 83592329 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGATA CCGCCGTCGC CGGTCCCCTG TTCCGCCTGC CTCCGTCGCC GGCCGAGGAC
AGCTCGCTGC CTTTGCTGAC CCTGTATGAG GTCAGCAAGA TCCTGGGGTC GACCCTGGAT
CTCGAGCATT CGCTCCACGA CGTTCTCAAT GTCCTCGCCT CGTATATGCA GATGCGCCGG
GGGGTGGTGA CGCTGAAGGA CGCGCAAAGG CAGCTCGAGG TGGTGGCGGT GTCGGGGATG
ACGCTGCGCA ACGCCGTGGA GGGCGAGGCG CGTTATCCCT TGGCCGTCGC CCAGGAGGTC
GTAAGCACGG CGATGCCGAT GATCGTGCCG TCGATGGCCG CCGATCCCCG CTTCGCCGCT
TTCGCCGCCG AGGCCGACGG TCTGGACGAC GAGGTGCAGT CGATGATCTG CGTGCCGATC
AAGGGCGGGG TGAAGCCGTT TGGCAGCCTG TCGATCGAGC GCCATCGCGA CCGGGGAACC
CGCTTCAAAT TCGAGCATGA TGTGCGCTTC CTGACCATGG TCGCCACCTT GATCGCCCAG
ACAGTCAGTC TGGAGCGCCG GGTGGTTGGC GATCGCGACA GGCTGATCGA GGAAAAGGCC
CGGCTGGAAA AGGCCCTGCC GAAGCGCGAA AAGCCGTTGA AGGGGACGAT CTTGGAAAAC
GTCGTCGGCC GGTCGTCGGC GATGATGAAG ATTTCCGCCC AGGTTCGCCA GATCGCCCCG
TCGCGGGCGA CGGTTCTTTT GCGCGGGGAA AGCGGCACCG GCAAGGAACT GATCGCCCAG
GCCATCCACT ATCTCAGCCC GCGCTCCGAC AAGCCCTTCA TCAAGGTCAA TTGCGCCGCC
CTGCCCGAGA CCTTGCTGGA ATCCGAGCTG TTCGGCCACG AGAAGGGCGC CTTCACCGGG
GCGACGACCG AACGCAAGGG CCGCTTCGAA ATGGCCAGCG GCGGCACGCT GTTTCTTGAC
GAGATCGGCG AGATCACCGT CCACTTCCAG GCCAAGCTGC TGCGCGTGCT TCAGGAAGGC
GAATTCGAGC GGGTTGGCGG CGGCAAGACG ATCAAGGTCG ACGTGCGGCT GGTGGCGGCG
ACCAACAAGG ATCTGGAAGA CGCGGTGACC CGGGGCGAAT TCCGCGCCGA TCTCTATTAC
CGCATCAATG TGGTGCCGAT CTTCCTGCCG GCCCTGCGCG AGCGCCGCGA GGACGTGCCG
CTGCTCGCCC AGTTCTTTCT GACCAAGTTC AACGAGGAAA ACGGCCGCTC GCTGCGCTTC
TCGGAAGGGG CCTTGACGGC GATGGGCGGT TGTAACTTCC CCGGCAATGT CCGCGAGCTG
GAGAATTGCG TCTGTCGCGC CGCCACCCTG GCCCAGGACG AGGTCATCCA GGAACTGGGG
CTGTCGTGCC ATAACGACAA ATGCCTGTCG GCCAGCCTGT GGCAGCGCCG GGGAAGCGGA
CGGGCGATCG GCGGTCTGGC CCCGGTTACC GAGCAGAACG ATCCCGATAC CACCTCGGTC
GCCTGGGAGG GCGATCTTCG CCCGGCCGCC CCGGCGCGCG CCGGAACGCC ACCGGGGCGC
GGCTATGCCG GTCCGGGGGA AAGCGCCGAT AGCCCGTCTT CCCCATCGGC CCCGCCGCCC
GCCGCCGCGC CGGCCGCCGA GGATGGCGAG GACGAGAGCG ACGCCGGCCA GCGCGAGCGC
ATCGTCCACG CCATGGAAAA GGCCGGCTGG GTCCAGGCCA AGGCCGCCCG CTTGTTGGGC
ATGACGCCGC GACAGATCGG CTATGCCCTG AAGAAGCACG ATATCCCGCT CAAGCGCATG
TAG
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| Protein sequence | MPDTAVAGPL FRLPPSPAED SSLPLLTLYE VSKILGSTLD LEHSLHDVLN VLASYMQMRR
GVVTLKDAQR QLEVVAVSGM TLRNAVEGEA RYPLAVAQEV VSTAMPMIVP SMAADPRFAA
FAAEADGLDD EVQSMICVPI KGGVKPFGSL SIERHRDRGT RFKFEHDVRF LTMVATLIAQ
TVSLERRVVG DRDRLIEEKA RLEKALPKRE KPLKGTILEN VVGRSSAMMK ISAQVRQIAP
SRATVLLRGE SGTGKELIAQ AIHYLSPRSD KPFIKVNCAA LPETLLESEL FGHEKGAFTG
ATTERKGRFE MASGGTLFLD EIGEITVHFQ AKLLRVLQEG EFERVGGGKT IKVDVRLVAA
TNKDLEDAVT RGEFRADLYY RINVVPIFLP ALRERREDVP LLAQFFLTKF NEENGRSLRF
SEGALTAMGG CNFPGNVREL ENCVCRAATL AQDEVIQELG LSCHNDKCLS ASLWQRRGSG
RAIGGLAPVT EQNDPDTTSV AWEGDLRPAA PARAGTPPGR GYAGPGESAD SPSSPSAPPP
AAAPAAEDGE DESDAGQRER IVHAMEKAGW VQAKAARLLG MTPRQIGYAL KKHDIPLKRM
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