Gene Rru_A0170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A0170 
Symbol 
ID3834148 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand- 
Start bp201233 
End bp201895 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content66% 
IMG OID637824248 
ProductCRISPR-associated Cse3 family protein 
Protein accessionYP_425262 
Protein GI83591510 
COG category 
COG ID 
TIGRFAM ID[TIGR01907] CRISPR system CASCADE complex protein CasE/Cse3 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.396726 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCATA TCACCCGCGC CGAGTTATCC CGCGACACCG GCGCCCGCAA AGCCCTGACC 
GCCTTGCTCC GCGATCAGGG CGGCACCGAT GGCGGACACC GGCTGGTGTG GACCTTGTTC 
GCCGATGATC CCAAGGCTTC GCGCGATTTT GTCTTCCGCG AAGCCGAGCC GGGGCGCTAT 
CTGATCGTTT CGGCCCGTCC GCCCGGCGAT GGGCAAGGGC TGTGGCGGCT GGAAACCAAG 
CCCTATGCTC CGGCCTTTCG TGAAGGCCAG CGCTTTGGGT TCACCCTGCG CGCCAATCCG 
GCGACCGCCG TCAAACAAGC CGGAGAGACG CGTGGCAAGC GGGTTGACGC GATCATGCAC 
GCCAAAACCC GCTCCGCCAC CCCGCTGACG GTCGAGGATC GGGAACGCGT CGCGCTGGAT 
TGGCTGCTCG ATCGCCAGCA GGGCTTTGGG GTGCTCTTCG AGCGCGCCTT GTGTTCGGCC 
GGCGGCTATC GCCAAGTTCG CGTTCCCCGT GGCGGCAAGG CCATCACTTT TTCGGTGATC 
GATTACGAGG GCGTGTTCAC CGTTCGCGAT CCCGGCCTTT TGGGGCAAGC CCTGGTACGG 
GGGATCGGCA AGGCCAAAGC CTATGGCTGC GGCTTGATGC TGCTGCGGCG GCTGGCGGAA 
TAA
 
Protein sequence
MSHITRAELS RDTGARKALT ALLRDQGGTD GGHRLVWTLF ADDPKASRDF VFREAEPGRY 
LIVSARPPGD GQGLWRLETK PYAPAFREGQ RFGFTLRANP ATAVKQAGET RGKRVDAIMH 
AKTRSATPLT VEDRERVALD WLLDRQQGFG VLFERALCSA GGYRQVRVPR GGKAITFSVI 
DYEGVFTVRD PGLLGQALVR GIGKAKAYGC GLMLLRRLAE