Gene Rru_A0169 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A0169 
Symbol 
ID3834147 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand- 
Start bp200286 
End bp201227 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content65% 
IMG OID637824247 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_425261 
Protein GI83591509 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03638] CRISPR-associated endonuclease Cas1, ECOLI subtype 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGATC CCGCCTTCGT CCCCTTGCGG CCCATCGCCA TCAAGGACCG CTCGTCGATC 
GTTTTTCTTC AGCGCGGCCA ACTCGACGTA GTGGACGGCG CCTTCGTTCT GATCGATCAA 
GAGGGGGTGC GCGTGCAGAT CCCCGTGGGC GGGCTGGCCT GCCTGATGCT GGAGCCGGGA 
ACGCGCATCA CCCATGCCGC CATCGTTCTC TGCGCGCGGG TGGGATGTCT GGTGATCTGG 
GTCGGCGAAC GCGGGACCCG TCTTTACGCC GCCGGGCAGC CCGGCGGCGC CAGGGCTGAC 
AGATTATTGT TCCAGGCGCG CAACGCCCTT GATGAAACCG CCCGTCTGAA TGTCGTTCGC 
GAAATGTATC GGCGCCGCTT TGACGACGAC CCGCCCGCCC GCCGGTCGGT GGACCAATTG 
CGCGGCATGG AGGGCGTGCG GGTGCGCGAG ATCTATCGCC TGCTCGCCAA AAAATACGCT 
GTGGACTGGA ACGCCCGGCG CTACGATCAC AACGATTGGG ATGGCGCCGA TATCCCCAAC 
CGCTGTCTGT CGGCGGCCAC CGCCTGTCTT TACGGGTTGT GCGAAGCGGC CATTCTGGCG 
GCGGGCTATG CCCCGGCCAT CGGTTTTCTC CATCGCGGCA AGCCGCAAAG CTTCGTTTAC 
GACGTCGCCG ACCTCTATAA GGTCGAAACC GTCGTTCCCA CCGCCTTTTC GATCGCCGCG 
AAGATCGCCG CCGGCAAGGG CGACGACAGC CCGCCCGAGC GTCAGGTCCG TATCGCCTGC 
CGCGACCAGT TCCGCAAATC CGGTCTGTTG GAAAAGATCA TTCCCGACAT CGAGGAGATC 
CTGCGCGCCG GGGGCCTGGA ACCGCCCCTT GACGCCCCCG AGGCCGTCGA TCCGGTTATC 
CCGCCAGAGG AGCCTTCGGG TGATGATGGT CATCGTGGTT GA
 
Protein sequence
MADPAFVPLR PIAIKDRSSI VFLQRGQLDV VDGAFVLIDQ EGVRVQIPVG GLACLMLEPG 
TRITHAAIVL CARVGCLVIW VGERGTRLYA AGQPGGARAD RLLFQARNAL DETARLNVVR 
EMYRRRFDDD PPARRSVDQL RGMEGVRVRE IYRLLAKKYA VDWNARRYDH NDWDGADIPN 
RCLSAATACL YGLCEAAILA AGYAPAIGFL HRGKPQSFVY DVADLYKVET VVPTAFSIAA 
KIAAGKGDDS PPERQVRIAC RDQFRKSGLL EKIIPDIEEI LRAGGLEPPL DAPEAVDPVI 
PPEEPSGDDG HRG