Gene Rru_A0054 details

Gene Information

• Locus tag: Rru_A0054
• ID: 3834384
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodospirillum rubrum ATCC 11170
• Kingdom: Bacteria
• Replicon accession: NC_007643
• Strand: +
• Start bp: 58117
• End bp: 60054
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637824124
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_425146
• Protein GI: 83591394
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACATCGA GACCGATAAC GCCGCTTTTG GACACGATCC GCGGTCCTTC GGACACACGG 
GGTCTTTCGG TGGCGCAGCT GGAGCAGCTG GCGCGCGAAG TGCGGGCGGA AATGATCGAT 
GCGGTCTCGG TGACCGGCGG TCATCTGGGC TCGGGGCTTG GGGTGGTCGA GCTGACGGTG 
GCCCTCCATC ACGTGTTCGA CACCCCCGAC GACCGCATCA TCTGGGATGT CGGCCATCAG 
TGCTATCCCC ACAAGATCCT GACCGGGCGG CGCGATCGCA TCCGCACCCT GCGCCAGGGC 
GGCGGGCTGT CGGGCTTCAC CCTGCGCGAG GAAAGCCCCT ATGACCCCTT CGGCGCCGGG 
CATTCCTCGA CCTCGATCTC GGCGGGTCTG GGCATGGCCA TCGGCTCGGC CCTGGCCGGC 
GACGCCCGCG ACGTGGTGGC GGTGATCGGC GACGGCTCGA TGAGCGCGGG CATGGCCTAT 
GAGGCGATGA ACAATGCCGG GGCGGCCAAA TCGCGGCTGA TCGTCATCCT CAACGACAAC 
GACATGTCGA TCGCCCCGCC GGTGGGGGCG ATGAGCGCCT ATCTGTCGCG GCTGCTCAGT 
TCGAAAAGCT GGCTGTCGAT CCGCACCCTG GCCAAGGAGA TCGTCGCCCG CCTGCCCGAC 
GCCCTGGAGC GCACGGCCAA GCGGGCCGAG GAATACGCCC GCGGCATGGT GACGGGCGGC 
GGCACGCTGT TCGAGGAGCT GGGCTTTTAT TACGTCGGGC CGATCGACGG CCATCGCATG 
GACCATCTGG TGCCGGTGCT GCGCAACGTG CGCGAGGCCG GGCGCGATGG TCCGGTGCTG 
ATCCACGTGG TGACGCAAAA GGGCAAGGGC TATGCCCCGG CCGAGAACGC GCCCGACAAA 
TACCACGGCG TGTCGCGCTT CAACGTGGTG ACCGGGGTTC AGGAAAAGGC CAAGCCGCAG 
GCGCCGTCCT ATACGGCGGT GTTTGGCAAG CAGCTGGTGG CGGCGGCGGC CAAGGACCAT 
CGGATCGTCG GGGTGACGGC GGCGATGCCC GGCGGCACCG GCCTTGACAA GCTGGCCACG 
GCCTATCCGC AGCGCTGCTT CGATGTCGGC ATCGCCGAAC AGCACGCCGT GACCTTCGCC 
GCCGGTCTGG CCTGCGAGGG GCTGAAGCCC TTCGTCGCCC TCTATTCCAG CTTTTTGCAG 
CGCGGCTATG ATCAGGTGGT CCACGACGTG GTCTTGCAGA AGCTGCCGGT GCGCTTCGCC 
ATCGACCGCG CCGGGTTCGT CGGCGCCGAC GGGGCGACCC ATGGCGGCGT CTTCGACATG 
GCCTTCCTCG GCTGCCTGCC CAATCTGGTG GTGATGTGCG CCGCCGACGA GGCCGAGCTG 
GCGCGCATGG TGGTGACGGC GGCCGGCCAT GACAGCGGCC CGATCGCCCT GCGCTATCCG 
CGCGGCGAGG GCGTGGGGGT GGAGATCCCC GAGGATCCCC AACCTTTGGC GATCGGCAAG 
GGCCGCATCG TGCGCGAGGG CAAGGGCGTG GCCCTGCTAT CGATCGGCAC CCGGCTGCAG 
TCGTGCCTGG AGGCTTGCGA GATCCTGGCG GCGCGCGGCC TGACGCCGAC GGTGGCCGAC 
GCCCGCTTCC TCAAGCCCTT CGACGAGGAA CTGGTGGCCG ATCTCGCCGC CCGCCACGAG 
GTGCTGATCG TCGTCGAGGA AGGCGCGATC GGCGGCTTCG GCGCCCATGT CGCCACTTGG 
CTGACCAACC AGGGCCTGCT CGACGGCGGC CTCAAGCTGC GCGCCCTGCA TATCCCCGAC 
CGCTTCTTCG AGCACGACGC GCCCGAGGTC CAATGCGCCA AGGCCGGCAT CGACGCCCAG 
GCCATCACCA CCGCCGTCCT CGACGCCCTC AAGCTTGAAA CCAGCGCCAC CATCGACGCC 
GGCGCCCTGA AGGCGTAA 

 

Protein sequence

MTSRPITPLL DTIRGPSDTR GLSVAQLEQL AREVRAEMID AVSVTGGHLG SGLGVVELTV 
ALHHVFDTPD DRIIWDVGHQ CYPHKILTGR RDRIRTLRQG GGLSGFTLRE ESPYDPFGAG 
HSSTSISAGL GMAIGSALAG DARDVVAVIG DGSMSAGMAY EAMNNAGAAK SRLIVILNDN 
DMSIAPPVGA MSAYLSRLLS SKSWLSIRTL AKEIVARLPD ALERTAKRAE EYARGMVTGG 
GTLFEELGFY YVGPIDGHRM DHLVPVLRNV REAGRDGPVL IHVVTQKGKG YAPAENAPDK 
YHGVSRFNVV TGVQEKAKPQ APSYTAVFGK QLVAAAAKDH RIVGVTAAMP GGTGLDKLAT 
AYPQRCFDVG IAEQHAVTFA AGLACEGLKP FVALYSSFLQ RGYDQVVHDV VLQKLPVRFA 
IDRAGFVGAD GATHGGVFDM AFLGCLPNLV VMCAADEAEL ARMVVTAAGH DSGPIALRYP 
RGEGVGVEIP EDPQPLAIGK GRIVREGKGV ALLSIGTRLQ SCLEACEILA ARGLTPTVAD 
ARFLKPFDEE LVADLAARHE VLIVVEEGAI GGFGAHVATW LTNQGLLDGG LKLRALHIPD 
RFFEHDAPEV QCAKAGIDAQ AITTAVLDAL KLETSATIDA GALKA