| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_B0040 |
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| Symbol | |
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| ID | 3833371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007641 |
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| Strand | + |
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| Start bp | 40773 |
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| End bp | 42251 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637824059 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_425076 |
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| Protein GI | 83582770 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0639189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCGT CTAGCCTCAC CCCCCAAGCC ATCGTCCCCC CGCCCGAGGC CCGGCCGCCG
GCCGAGCCCC CGGCGCCCCC CGCCCCGTCG ACGACGGCGC CGGCCCAAAC GCCGGCCAAG
GCATCGGCCA AGATGCCGGG CGACACCACG CCGGCGCGCT GGACCGAGGG GATGCTGTCC
ATTCCCAAGG TCGTGACCGA TTCGCGCCAG ACGATCAGGG CGGGCTGGTT GATCATCCTG
GTCGCCTTTG GCGGCCTCGG GCTGTGGGCG GCGACGGCGC CGCTGTCAAG CGCCGTGGGC
GCCCCGGGCA CCATCGTTGT TGAAAGCAAC CGCAAGACCG TTCAGCACCT TGAAGGCGGC
ATCATCAAGG AAATTCTGGT CAAGGAAGGC GACCGGGTGC ACCAGGGCGA TCCGCTGATC
CGCCTGGAAA CCACCCAGGC CCTGGCCAGC GCGGCGGTGG TCAGCAATCA GTTTGAAACC
TATCAGGCCC TGGAGGCCCG CCTTGTCGCC GAACGCGACG AGCAAAAGAC CATCACCTTC
CCCCCCGATC TGATCGCCGT CGCCAAGCTC AAGCCGGAAA CGGCGGAAAT CCTTCAGGCC
CAGCAGCAGC AGTTCGATGA GCGCCATAAG TCGATCGAAG GCCAAGTCGC CATCTTGCAA
AAGCGCATCG CCCAAAGCCG CCAGGAGATC GAAGGGCTGA AGGTTCAGCG CCAATCCAAG
AAGCGCCAGC TTGAAATCTT CCAAGACGAA ATCGTCGGCC TGCGCGAATT GCTGGCCAAG
GGCTATACCC CGCGCACCCG CATCCTGGCG ATGGAACGGG AAATGACCCG GCTGGAAGGC
GAGGTCGGCA CCGATACCTC GTCGATGGCG CGAGCCGAAC AAGCGGTTGG CGAAGCGGAA
CTGCAGATCA TCCAGACCCG CCAGCAATTC CGCGAAGACG TCGTCGGCCA GCTGCGCGAG
GTCCAGACCA AACTGTCGGA ACTGCGCGAA CGCGGCACGG TGGCGACCGA TGTGCTGAGC
CGAACCGTCC TCCTCGCCTC GCAGGCAGGG GTGATCCAGA ACCTCGCGGT TCATACCCTG
GGCGGCATCA TCAAACCCGG TGAAACGCTG ATGGAGATCG TGCCCGAAGA CGATCGCCTA
GTCATCGAGG CCCAGATTTC GCCGCGCGAC ATCGACAATG TCGTTCCCGG CATGGACACC
GAAGTGCGGT TCTCGGCCTT CAATTCCCGC ACCATCCCGA TCATCGACGG GGTGCTGTCC
CAGGTTTCGG CCGACCGTTT CGTCAACGAG CGCGATAGCT CATCTTATTA CAAGGCGCGG
ATCGAGGTCT CGGACGAGGA ACTGGCCAAG CTGGGCGGAC TGGCCCTGCG CGCCGGCATG
CCCGTCGACG TGATGATCAA AACCGGCGAG CGCACCGTTC TTCACTACTT CCTCAAGCCC
CTGGAAGACG CCCTGTTCCA CGGTTTGATC GAGGAGTAA
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| Protein sequence | MTSSSLTPQA IVPPPEARPP AEPPAPPAPS TTAPAQTPAK ASAKMPGDTT PARWTEGMLS
IPKVVTDSRQ TIRAGWLIIL VAFGGLGLWA ATAPLSSAVG APGTIVVESN RKTVQHLEGG
IIKEILVKEG DRVHQGDPLI RLETTQALAS AAVVSNQFET YQALEARLVA ERDEQKTITF
PPDLIAVAKL KPETAEILQA QQQQFDERHK SIEGQVAILQ KRIAQSRQEI EGLKVQRQSK
KRQLEIFQDE IVGLRELLAK GYTPRTRILA MEREMTRLEG EVGTDTSSMA RAEQAVGEAE
LQIIQTRQQF REDVVGQLRE VQTKLSELRE RGTVATDVLS RTVLLASQAG VIQNLAVHTL
GGIIKPGETL MEIVPEDDRL VIEAQISPRD IDNVVPGMDT EVRFSAFNSR TIPIIDGVLS
QVSADRFVNE RDSSSYYKAR IEVSDEELAK LGGLALRAGM PVDVMIKTGE RTVLHYFLKP
LEDALFHGLI EE
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