| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_B0039 |
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| Symbol | |
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| ID | 3833370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007641 |
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| Strand | + |
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| Start bp | 39009 |
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| End bp | 40766 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637824058 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_425075 |
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| Protein GI | 83582769 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCTCTCG TTCCCAAGGC GAAACCGCAA AGCCAAAAGG TCGTCACCGA ACTGCAGGAG
GCCTTGAAAA AGGCCCGCGG CGGCTTCGTG TCGACCATGG CGTTCAGTTT CTTTATCAAT
CTTCTGTTGT TCGTTTCGCC GCTTTACATG CTGCAGGTTT ACGATCGGGT GCTGACCAGC
CGCTCGAATT CGACCCTGGT GGTGTTGACC CTCGCCGCCG TCGGCGCCCT GATCGTGCTT
GGGCTGATCG AGGCGGTGCG CTCGCGCATC CTGGTGCGCA CCGGCGCCCT GATCGATACC
GAGCTCAACA CCCGGGTGTT TAGTTCGGTC TTCCAGCAGG CGGTGAGGCG GCCGGCGGCG
GGCTATACCC AGGCCCTGCG CGATTTGGAC ACCTTGCGCG AATTCCTGAC CGGATCGGGG
CTGATCGTGT TTTGCGACGC CCCCTGGGCG CCGCTGTTCA TCGCCTTGGG CTTCGTTTTG
CACCCGCTGC TGGGTCTGGT GTCGCTGTTT GGCGCCATCG TGGTTTTCGC CCTGGCGATC
GTGAACAACC TGGGCACCCG CGGCTTGCTC AAAGACGCCG GCACGGTGTC GATGCACGCC
AACAACTATG TCAGCTCCAG CTTGCGCAAT GCCGAAGTGT TGGAAGCCAT GGGCATGATG
TCCAACATCC AGCGGCGGTG GAGCGAGCGG CACGACGCGG TGATCGGCCT GCAGGCCAAG
GCCTCGGACC GCGCCTCGGC GGTGATGGCG GCGTCGAAAT CCTTCCGCAT GGGGCTGCAG
GTGGCCATTC TCGGCACCGG CGCCTATCTG GCCATCCACA GCGAAATCTC GCCGGGCACG
ATGATCGCCG CCTCGATCAT CATGGGCCGG GCGCTGCAGC CCGTTGAAAT GGCCGTCGGC
CAATGGAAGG GGCTGGTCGC CGCGCGCGGC GCCTATGAGC GGCTGACAGA TCTTTTGGCC
AATAACGCCG CCGGCAAGGA CACCATGACC CTGCCCCGCC CCGAAGGGCG GGTGAGCCTG
CAGCAGGTGG TGATCGTGCC GCCGGGCAGC AGCGTTCCGG CTTTGCGCGG CGTGACCTTG
GATATCGCCC CGGGCGAGGT TCTCGGCGTC ATCGGCCCCA GCGCGGCGGG AAAATCGACC
CTGGCCCGCG CCCTGGTCGG GGTCTGGCCG CCCGTTCAGG GGATCGTCCG CCTGGACGGC
AACGACCTGC GCCATTGGAA ATCCGAGGAG ATCGGCCCCC ATCTTGGCTA TCTGCCCCAG
GATGTGGAAT TGTTCGACGG CAGCGTCGCC GAAAACATCG CCCGCTTCGG CGATATCGAC
CCCGACAAGG TGATCGCCGC CGCCCGCAAG GCGGGGGTCC ACGACATGGT GCAGAAGCTG
CCCGAAGGCT ATGACACCAA GATCGGCGTC GGCGGTCAGG CCCTGTCGGG CGGCCAGCGC
CAGCGCATCG CCCTGGCCCG GGCGGTCTAT AACGATCCGG TGCTGGTGGT GCTTGACGAA
CCCAACGCCA GCCTTGATGC CGATGGCGAA GCCGCCCTGA TGGTGGCCAT TGACGGCATG
CGGGCGGCCG GCCAGACGGT GGTGGTGATC ACCCATAAGC CGACCCTGCT CAATGCCGTC
GATACGGTGC TCGTGCTCAA GGGCGGGCTG GTTGAAATGA AGGGGCCGCG CGCCGATGTG
CTGTCGAAAT TCGCCCGACC GCGGGCGGTG GCCAGCCAGG ACGCTCCCGT TCAGATCACC
GCCACGCCGG GGATTTAA
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| Protein sequence | MALVPKAKPQ SQKVVTELQE ALKKARGGFV STMAFSFFIN LLLFVSPLYM LQVYDRVLTS
RSNSTLVVLT LAAVGALIVL GLIEAVRSRI LVRTGALIDT ELNTRVFSSV FQQAVRRPAA
GYTQALRDLD TLREFLTGSG LIVFCDAPWA PLFIALGFVL HPLLGLVSLF GAIVVFALAI
VNNLGTRGLL KDAGTVSMHA NNYVSSSLRN AEVLEAMGMM SNIQRRWSER HDAVIGLQAK
ASDRASAVMA ASKSFRMGLQ VAILGTGAYL AIHSEISPGT MIAASIIMGR ALQPVEMAVG
QWKGLVAARG AYERLTDLLA NNAAGKDTMT LPRPEGRVSL QQVVIVPPGS SVPALRGVTL
DIAPGEVLGV IGPSAAGKST LARALVGVWP PVQGIVRLDG NDLRHWKSEE IGPHLGYLPQ
DVELFDGSVA ENIARFGDID PDKVIAAARK AGVHDMVQKL PEGYDTKIGV GGQALSGGQR
QRIALARAVY NDPVLVVLDE PNASLDADGE AALMVAIDGM RAAGQTVVVI THKPTLLNAV
DTVLVLKGGL VEMKGPRADV LSKFARPRAV ASQDAPVQIT ATPGI
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