Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_B0039 |
Symbol | |
ID | 3833370 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007641 |
Strand | + |
Start bp | 39009 |
End bp | 40766 |
Gene Length | 1758 bp |
Protein Length | 585 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637824058 |
Product | Type I secretion system ATPase, PrtD |
Protein accession | YP_425075 |
Protein GI | 83582769 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCTCTCG TTCCCAAGGC GAAACCGCAA AGCCAAAAGG TCGTCACCGA ACTGCAGGAG GCCTTGAAAA AGGCCCGCGG CGGCTTCGTG TCGACCATGG CGTTCAGTTT CTTTATCAAT CTTCTGTTGT TCGTTTCGCC GCTTTACATG CTGCAGGTTT ACGATCGGGT GCTGACCAGC CGCTCGAATT CGACCCTGGT GGTGTTGACC CTCGCCGCCG TCGGCGCCCT GATCGTGCTT GGGCTGATCG AGGCGGTGCG CTCGCGCATC CTGGTGCGCA CCGGCGCCCT GATCGATACC GAGCTCAACA CCCGGGTGTT TAGTTCGGTC TTCCAGCAGG CGGTGAGGCG GCCGGCGGCG GGCTATACCC AGGCCCTGCG CGATTTGGAC ACCTTGCGCG AATTCCTGAC CGGATCGGGG CTGATCGTGT TTTGCGACGC CCCCTGGGCG CCGCTGTTCA TCGCCTTGGG CTTCGTTTTG CACCCGCTGC TGGGTCTGGT GTCGCTGTTT GGCGCCATCG TGGTTTTCGC CCTGGCGATC GTGAACAACC TGGGCACCCG CGGCTTGCTC AAAGACGCCG GCACGGTGTC GATGCACGCC AACAACTATG TCAGCTCCAG CTTGCGCAAT GCCGAAGTGT TGGAAGCCAT GGGCATGATG TCCAACATCC AGCGGCGGTG GAGCGAGCGG CACGACGCGG TGATCGGCCT GCAGGCCAAG GCCTCGGACC GCGCCTCGGC GGTGATGGCG GCGTCGAAAT CCTTCCGCAT GGGGCTGCAG GTGGCCATTC TCGGCACCGG CGCCTATCTG GCCATCCACA GCGAAATCTC GCCGGGCACG ATGATCGCCG CCTCGATCAT CATGGGCCGG GCGCTGCAGC CCGTTGAAAT GGCCGTCGGC CAATGGAAGG GGCTGGTCGC CGCGCGCGGC GCCTATGAGC GGCTGACAGA TCTTTTGGCC AATAACGCCG CCGGCAAGGA CACCATGACC CTGCCCCGCC CCGAAGGGCG GGTGAGCCTG CAGCAGGTGG TGATCGTGCC GCCGGGCAGC AGCGTTCCGG CTTTGCGCGG CGTGACCTTG GATATCGCCC CGGGCGAGGT TCTCGGCGTC ATCGGCCCCA GCGCGGCGGG AAAATCGACC CTGGCCCGCG CCCTGGTCGG GGTCTGGCCG CCCGTTCAGG GGATCGTCCG CCTGGACGGC AACGACCTGC GCCATTGGAA ATCCGAGGAG ATCGGCCCCC ATCTTGGCTA TCTGCCCCAG GATGTGGAAT TGTTCGACGG CAGCGTCGCC GAAAACATCG CCCGCTTCGG CGATATCGAC CCCGACAAGG TGATCGCCGC CGCCCGCAAG GCGGGGGTCC ACGACATGGT GCAGAAGCTG CCCGAAGGCT ATGACACCAA GATCGGCGTC GGCGGTCAGG CCCTGTCGGG CGGCCAGCGC CAGCGCATCG CCCTGGCCCG GGCGGTCTAT AACGATCCGG TGCTGGTGGT GCTTGACGAA CCCAACGCCA GCCTTGATGC CGATGGCGAA GCCGCCCTGA TGGTGGCCAT TGACGGCATG CGGGCGGCCG GCCAGACGGT GGTGGTGATC ACCCATAAGC CGACCCTGCT CAATGCCGTC GATACGGTGC TCGTGCTCAA GGGCGGGCTG GTTGAAATGA AGGGGCCGCG CGCCGATGTG CTGTCGAAAT TCGCCCGACC GCGGGCGGTG GCCAGCCAGG ACGCTCCCGT TCAGATCACC GCCACGCCGG GGATTTAA
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Protein sequence | MALVPKAKPQ SQKVVTELQE ALKKARGGFV STMAFSFFIN LLLFVSPLYM LQVYDRVLTS RSNSTLVVLT LAAVGALIVL GLIEAVRSRI LVRTGALIDT ELNTRVFSSV FQQAVRRPAA GYTQALRDLD TLREFLTGSG LIVFCDAPWA PLFIALGFVL HPLLGLVSLF GAIVVFALAI VNNLGTRGLL KDAGTVSMHA NNYVSSSLRN AEVLEAMGMM SNIQRRWSER HDAVIGLQAK ASDRASAVMA ASKSFRMGLQ VAILGTGAYL AIHSEISPGT MIAASIIMGR ALQPVEMAVG QWKGLVAARG AYERLTDLLA NNAAGKDTMT LPRPEGRVSL QQVVIVPPGS SVPALRGVTL DIAPGEVLGV IGPSAAGKST LARALVGVWP PVQGIVRLDG NDLRHWKSEE IGPHLGYLPQ DVELFDGSVA ENIARFGDID PDKVIAAARK AGVHDMVQKL PEGYDTKIGV GGQALSGGQR QRIALARAVY NDPVLVVLDE PNASLDADGE AALMVAIDGM RAAGQTVVVI THKPTLLNAV DTVLVLKGGL VEMKGPRADV LSKFARPRAV ASQDAPVQIT ATPGI
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