Gene Rru_B0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_B0038 
Symbol 
ID3833369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007641 
Strand+ 
Start bp38320 
End bp38886 
Gene Length567 bp 
Protein Length188 aa 
Translation table11 
GC content63% 
IMG OID637824057 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_425074 
Protein GI83582768 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.262213 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGTCG AGGTCACCCA TCTGGATATC GCCGAGGTCA AGATCCTCCG CCCCGCCAAA 
TTCGGCGATG ATCGCGGGTT CTTTTCCGAA ACCTATAACA AGGTCGCCCT GGCCGAGGTT 
GGCATCACCC TGGAGTTCAT CCAGGACAAC CATTCCTTTT CGGCGAAGGC CGGCACGGTG 
CGCGGCCTGC ATTTCCAAAC CCCGCCCTTC GCCCAGGACA AGCTGATCCG CGTCGTGCGC 
GGCGCCCTCT TCGATGTCGC GGTGGATTTG CGGGTGGGCT CGCCGACTTA CGGCCAGTCC 
GTCTCGGCGG TGATCTCGGC GGCGGCCTGG AACCAGATCC TGATTCCGGC CGGCTTCGCC 
CATGGCCTGT GCACGATCGA GCCCGATACC GAGGTGCTGT ATAAGGTCAG CGCCCCCTAT 
TCCCCCGATC ATGACAAGGG GCTTTTGTGG AACGATCCGG CGCTCGGCAT CGAATGGCCG 
GTCAGCCCAG GGGCGGCGAT CCTGTCGGAC AAGGACGCCC GCCAGCCGGT ATTGGCCGAT 
CTGCCGGCTT ATTTCACCTA TCCTTAA
 
Protein sequence
MAVEVTHLDI AEVKILRPAK FGDDRGFFSE TYNKVALAEV GITLEFIQDN HSFSAKAGTV 
RGLHFQTPPF AQDKLIRVVR GALFDVAVDL RVGSPTYGQS VSAVISAAAW NQILIPAGFA 
HGLCTIEPDT EVLYKVSAPY SPDHDKGLLW NDPALGIEWP VSPGAAILSD KDARQPVLAD 
LPAYFTYP