| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MCAP_0097 |
|---|
| Symbol | |
|---|
| ID | 3828841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycoplasma capricolum subsp. capricolum ATCC 27343 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007633 |
|---|
| Strand | - |
|---|
| Start bp | 116085 |
|---|
| End bp | 118199 |
|---|
| Gene Length | 2115 bp |
|---|
| Protein Length | 704 aa |
|---|
| Translation table | 4 |
|---|
| GC content | 21% |
|---|
| IMG OID | 637823263 |
|---|
| Product | 3'-5' exoribonuclease |
|---|
| Protein accession | YP_424091 |
|---|
| Protein GI | 83319777 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCTA AAATTATTGA AATTTTAAAA ACTAACAAAC ATAAAGTTAG TTTAAATAAA
CTATTGACTT ATTTTAATGC TTTAGATTAT TCATTAATTA AAAACTACTT AGACCAATTA
GAAAAAAATA ATAAAATCAC TATTTCATTA GAAAATAATA TTTACTTATT AGATCAAATT
TATAAAAAGG GAACTATTAA ACTAAATCCA AAAGGTTTTG GATTTATAAA TGATATTAAT
AAAATTAATG ATGAAGATCA TTTTATAGCC GGAGTTGATC TAAATAATAG TATTCATCAA
GATGAAGTAG TTTATATTTT AAAACAAGAA GAAGATAATA GATTAAAAGC TATAGTTATT
GATCTAATTA AAAGAAATAA AGTTTATTTA ATTGGTGAAA TAAATAGAAG TTTTGATAAA
AGATTTTTAG ATTTCATTCC AAACGATAAG TCATTTGATA GTTTTAGATT TGTAATTGTT
AATAAAAATG AATTTAAATA TGAAGAATTT AATATTATTA AAGCAAAAAT TATAAGCTGT
AAAGAACGTA AAATTTTTAT AAGACTTATA AGAATTATTG GTAATAGTAA AAAAGCAAGT
GATCGCATTT TAGCAATAGC TGAAGAATTT GATATAAAAA CTAGTTTTGA TAAACAAACT
CTAGATAATG CAAAACAAAT TAATTTATCA ACTGATAAAC TAGAAAAAGA GTTTTTAAAA
AGACAAAATA ATTCTTTAGT TAATAAAACG ATTGTTACAA TTGATGGAAT TGATTCAAAA
GATTTAGATG ATGCAATTTG TGTTGAAAAA TTAGAAAATA ATAATTATAA ACTATTTGTT
GCTATTGCTG ATGTTTCTTA TTTTGTTAGA TATAAAACTA GTTTAGACAA AGAAGCTTTA
TTAAGAGGTA ATTCGACTTA TTTAGCAAAT AAAGTAATTC CAATGCTACC AAACATCTTA
TCTGATGATT TGTGCTCATT AAATCCAAAT ACTAAAAAAT TAGTTTTTGT ATGTGAAATG
GAATTTGATA ATAACGCAAA CATGTTAAAT AAAAAAGTTT ATGAATCAGT GATTATTTCT
AAAGCTAGAT TAAATTATGA TGAAGTAAAT AATTACTTTA AAACTAAAAC TTGAACTCAT
GATGATAAAA CTAAAAAAAT GTTAGACATA GCTTATGAGT TGTATAAAAA ATTAGAGAAT
TTAAAAGCTA AAAAGGGAAC TATTAGTTTT GATGTTAGAG AGCCAAAAAT TATTTTGGAT
AAAAATTTAA ATGTAATTGA TATTAAAACA AAAACAGCTG ATCAAGCTGA AAAATTAATT
GAACAATTTA TGGTAAGTTG TAATGAAGCA GTAGCTGAAT TAATCTATCA AAAAGATTTA
CCTTTTTTAT ATAGAAATCA TAATAAACCA GATGAAGATG AACTAATTAA TTGATATAAA
TCACTAAAGA CATTTGGAAT TAATCCTAAA TTAACTAATA AACAAGTTTT AGATCCAATA
TTTATTAATC ACACTTTAAG TCAAATTAAA GAACAAATTA AAGATGAAAC TGAAGTTGAA
TTATTAAATA TTTCTTTATT AAGATATATG GATAAAGCTA AATATGGATT AGAAAATATT
GGTCATTTTG GTTTAGCTAG TGATTGTTAT ACTCATTTTA CTTCTCCAAT TAGAAGATAT
TCAGATTTAT TAGTTCATAG ATATTTAAAA CAATATCTAA TTACAAAAGA TCTAGAAAAA
ACTAGTTTAG AAAATAATGC AAATTATGTT AATAAAGTAA GTAATATTAT TAATGATACT
GAAACTAAAA GTGTTGAATG TGAAAGAGAA GTTATTAAGG CATGTATGTG CGAATATATG
CTAAATAAAG TTAATAATAC TTATACAGCA ACAATTTCAG CAGTTTTAAA ATTTGGAATT
TTTATTCAAT TAGATAATTT AGTTGAAGGA TTAGTTCATA TTTCAAATAT GAATAGTGAT
TTAGTATATG ATGAAACTAA TCGTATTTTA ATTAAACCTG ATAATACTTA TTATAGAATG
GGTCAAAAAG TCAAAGTTAA ACTAATTAAT GTTGATATTA AAAAAAGAAC AATTGATTTT
GTTTTAATAG AATAA
|
|---|
| Protein sequence | MESKIIEILK TNKHKVSLNK LLTYFNALDY SLIKNYLDQL EKNNKITISL ENNIYLLDQI
YKKGTIKLNP KGFGFINDIN KINDEDHFIA GVDLNNSIHQ DEVVYILKQE EDNRLKAIVI
DLIKRNKVYL IGEINRSFDK RFLDFIPNDK SFDSFRFVIV NKNEFKYEEF NIIKAKIISC
KERKIFIRLI RIIGNSKKAS DRILAIAEEF DIKTSFDKQT LDNAKQINLS TDKLEKEFLK
RQNNSLVNKT IVTIDGIDSK DLDDAICVEK LENNNYKLFV AIADVSYFVR YKTSLDKEAL
LRGNSTYLAN KVIPMLPNIL SDDLCSLNPN TKKLVFVCEM EFDNNANMLN KKVYESVIIS
KARLNYDEVN NYFKTKTWTH DDKTKKMLDI AYELYKKLEN LKAKKGTISF DVREPKIILD
KNLNVIDIKT KTADQAEKLI EQFMVSCNEA VAELIYQKDL PFLYRNHNKP DEDELINWYK
SLKTFGINPK LTNKQVLDPI FINHTLSQIK EQIKDETEVE LLNISLLRYM DKAKYGLENI
GHFGLASDCY THFTSPIRRY SDLLVHRYLK QYLITKDLEK TSLENNANYV NKVSNIINDT
ETKSVECERE VIKACMCEYM LNKVNNTYTA TISAVLKFGI FIQLDNLVEG LVHISNMNSD
LVYDETNRIL IKPDNTYYRM GQKVKVKLIN VDIKKRTIDF VLIE
|
|---|
| |