| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmul_A2057 |
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| Symbol | |
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| ID | 3784375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosospira multiformis ATCC 25196 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007614 |
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| Strand | - |
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| Start bp | 2348764 |
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| End bp | 2350887 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637812146 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_412743 |
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| Protein GI | 82703177 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00133668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAATCA AGGAATCTGA AGATATGAAG AAGCTGTTGA GAGCGCAGGC GAAAGAAGCG
GCAGCAAAAG AACTGACGAA GGTGGATGAA GAAATGTTCG ATAATGACAG TGAAACGGAA
ACGGATTCAA TGGCTAAAGC TCCGGAGCAG GTGACCGAGA TTGCGAAGGC AGTGATGGCG
GCGAAAGAGC CCACCCTCGC CAATGGCAAG ATCGCAAGAT CAAGAGCGGC CCGGGAAGGA
AAAAACTCGC ACGCCAAGGA TCCGGAAAAA GCTGCCGCCT CCCAGGAGCT CGAGGCGCGC
CGCATGCGTC TCAAGAATCT GATCGTGCAG GGCAAGGAAC GCGGCTATCT CACTTACGCC
GAAATCAATG ATCATCTCCC CGACGATATG CTCGACGCGG AGCAGATCGA GAACATCATC
AGCATGATCA ATGACGTCGG GATTTCCGTT TATGACGAGG CGCCCGACGC GGAAACGCTG
CTCATGTCTG AAACTGCCCC TACCGTGGCC GATGAGGATG TGGTGGAGGA AGCGGAAGCC
GCGCTTTCCA CTGTGGATTC GGAGTTCGGG CGCACAACCG ACCCTGTCCG GATGTATATG
CGCGAAATGG GTTCCGTGGA ACTGCTGACG CGTGAGAGCG AAATCGAAAT CGCAAAACGT
ATCGAGGACG GCTTGAAGCA CATGATACAG GCGATTTCCG CCTGTCCGAC AACCATAGCC
GGAATTCTCG AATTCGCCGA CAGAGTGTCG AAAGACGAGA TGCGTGTGGA TGAGCTGGTG
GATGGGTTGC TCGATCCCAG CACAGAGGAA ATTATCAGCG AAGAGATTTC CGATGAATCC
CTGGAACAGG AATTGAACTC GGATGCGGAA GATGAGGATG TCACCGCAGT CGCAAATGCC
AACCTCCTCA AGCTGAAAAA TGACGCGCTG GAGCGTTTTG CAGTGGTTCA AAAGGCTTAT
GACGAGATGC AGAAGGTGCT CGAAAAGAAA GGATCGGGCA ACAAGGCCTA TAAAGACATC
CAGGAGCAGA TTTCGTCCGA GCTGATGGCT ATCCGTTTCT CTGCCAAAAT GGTTGAACGG
TTGTGCGATA CGCAGCGGGC ACTGGTGGAT GAAATGCGCG GTTACGAGCG AAAAATAATG
GAGCTTTGCG TAAGCAAGGT GGGAATGTCG CGTAACCACT TCATCAAGAC CTTCCCCGGT
AACGAGAGTA ACCTGAACTG GGTGGATGAG GAGATTGCAC TCGGCAAACC CTACAGCGCA
GCCCTGGAAC GTTATCGTCC CGAGATTGTG GAACAGCAAC AGAATCTGCT GGCACTGCAA
AAGCAGGTAG GCATTCCCTT GAAGGAACTC AAGGAAATCA ACCGCCGCAT GTCCACGGGT
GAGGCGAAGG CGCGCCGGGC CAAACGTGAA ATGACCGAAG CAAATTTGCG ACTGGTGATT
TCCATCGCTA AAAAATATAC CAATCGGGGA TTGCAGTTCC TCGATCTCAT TCAGGAAGGC
AACATCGGCC TGATGAAGGC AGTCGATAAA TTCGAATACC GGCGGGGATA CAAGTTTTCC
ACCTACGCAA CCTGGTGGAT TCGTCAGGCC ATCACACGTT CCATTGCGGA TCAGGCGCGT
ACCATCCGTA TCCCGGTGCA CATGATCGAA ACGATTAACA AGATGAACCG CATTTCCCGC
CAGATCCTGC AGGAAACCGG GCAGGAGCCG GAGCCCGCCG TCCTCGCACA GAAAATGGAA
ATGCCGGAAG AGAAGATTCG TAAAATCCTC AAGATTTCCA AGGAACCAAT TTCCATGGAG
ACCCCGATCG GAGACGACGA AGATTCTCAT CTCGGGGATT TCATCGAGGA TTCAGCTACC
ATGGCTCCTG CGGATGCGGC AGTTTATGCC AGCCTGCGCG ATGTTACGAA AGATATACTG
GATTCGCTGA CTCCGCGCGA AGCAAAAGTA CTGCGCATGC GCTTCGGCAT CGAAATGAAT
ACCGACCACA CGCTGGAGGA AGTCGGCAAG CAGTTCGACG TAACGCGCGA GCGCATCCGC
CAGATCGAGG CCAAGGCACT GCGCAAGCTG CGCCATCCGT CCCGTTCCGA GCGCCTGCGC
AGCTTCCTGG ATACTGAAGG CTGA
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| Protein sequence | MAIKESEDMK KLLRAQAKEA AAKELTKVDE EMFDNDSETE TDSMAKAPEQ VTEIAKAVMA
AKEPTLANGK IARSRAAREG KNSHAKDPEK AAASQELEAR RMRLKNLIVQ GKERGYLTYA
EINDHLPDDM LDAEQIENII SMINDVGISV YDEAPDAETL LMSETAPTVA DEDVVEEAEA
ALSTVDSEFG RTTDPVRMYM REMGSVELLT RESEIEIAKR IEDGLKHMIQ AISACPTTIA
GILEFADRVS KDEMRVDELV DGLLDPSTEE IISEEISDES LEQELNSDAE DEDVTAVANA
NLLKLKNDAL ERFAVVQKAY DEMQKVLEKK GSGNKAYKDI QEQISSELMA IRFSAKMVER
LCDTQRALVD EMRGYERKIM ELCVSKVGMS RNHFIKTFPG NESNLNWVDE EIALGKPYSA
ALERYRPEIV EQQQNLLALQ KQVGIPLKEL KEINRRMSTG EAKARRAKRE MTEANLRLVI
SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK FEYRRGYKFS TYATWWIRQA ITRSIADQAR
TIRIPVHMIE TINKMNRISR QILQETGQEP EPAVLAQKME MPEEKIRKIL KISKEPISME
TPIGDDEDSH LGDFIEDSAT MAPADAAVYA SLRDVTKDIL DSLTPREAKV LRMRFGIEMN
TDHTLEEVGK QFDVTRERIR QIEAKALRKL RHPSRSERLR SFLDTEG
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