| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nmul_A1605 |
|---|
| Symbol | |
|---|
| ID | 3784837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosospira multiformis ATCC 25196 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007614 |
|---|
| Strand | - |
|---|
| Start bp | 1840420 |
|---|
| End bp | 1842486 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637811694 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_412298 |
|---|
| Protein GI | 82702732 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0013251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAA CGCTGGAACT GAGCCAATCA CTCTCCTTGC TGGAGACAGT CTTAAAGGCG
ACGGCTGACG GCCTCCTTGT GGCGGACAAG CTGGGCAAGG TGCTTTGCTA CAACCAGCTT
TACGTGAATA TGTGGCACAT TCCAGGTGAA CTCCTGGCTC ATGCGAGACA CCAGGCAATC
CTCGACTATT GCGCCGGGCA ATTAAGAGAT CCCGAGCAAT TCCTGCACTC GACCGAAGAA
ATTTATGGCA CTTGGACACC GGAAAGCTTT GATATCTTCG AATTTTGTGA TGGGCGGGTA
TTTGAGCGGT ATACAAAAAC CAAAACCCTT GAAGGGTCAA ACATGGTTCG CGTTTGGAGC
TTCAGGGATA TTACTGAACG AAGACAGGGG GAGAGCTACA AAGCGCAGTT AGCGGCAATC
CTCGACTCCT CGAACGATGC GCTCATTATC AAGGATCTCA ATGGCATCAT TAGCGGGTGG
AACACCGGTG CGGAACGGAT TTTTGGTTAC CGTGCGAGCG AAATCATAGG TAGTCCGATC
TCCCGACTAA TTCCACCCGA TCGCCTGGAG GAAGAGGACA GAATCATGAA CCTCGTCAAG
AGCGGAAAAC AAACAAATCA TCTGGAAACC GTGCGATGGG GGAAGGGCAA GAAACCGATT
GATGTCTCCG TCACGATATC CCCGGTGAAG GATAACGCAG GCCACATTGT CGGTGCATAC
AAGATAGCGC ACGATATCAC TCAGCGCAAG GAATCGCTAA AACGTATCGA GTATCTCGCC
CATTACGATT TGCTGACCGG GCTGCCCAAC CGCGCGCTGT TCACCGACCG CATGAGGATC
GCGATCGAGA ACGCCAGCCG CTATGCCTTC CGGCTGGCAT TACTATTCGT GGACCTCGAT
CGCTTCAAGC TGATCAACGA TTCGCTTGGT CATGCAATCG GCGACAAGCT GCTCAGGGCA
GTTGCAGAGC GCATGCAGTC CACGGTTCGC CAGGCGGATA CAGTCAGTCG GCTGGGGGGG
GATGAGTTCG TTGTCCTGCT GGGCCGGATT CATACAGCGA CGGAGGCGGC GCGAGTTGCC
GAGAAGCTTA TTGCAGTCTT GTCTCAGCCC TATCAAATAG AACAGCATGA ACTCTTGCTG
ACCGCAAGCG TCGGGATCAG CATTTATCCG GATAGCGGTA AGGACGTCAA CAGCTTGATG
CGCAATGCCG ACGTTTCGAT GTATTCGGCC AAGGGGCAGG GCAGGAACCG CTACCAGTTC
TATTCTGAAG ATTTGACTTC CGGCGCAGAC GAGCGGCTCA GGCTGGAATA CGACCTGCGC
AGCGCTCTTG CGCGTGACGA AATTTTCCCG GTCTACCAGC CACAGCTGGA GCTTGCTACC
GGACGCGTGG TAGGCGTGGA GGCGCTCATG CGCTGGAAGC ACCCCGAGCG AGGGCTAGTC
TCCCCTGCAA GCTTTATTCC CGTAGCCGAG GACAGCGGTT TGATTCTGTC TCTGGGGGAG
CACATCCTGA GGGAATCCTG CCTGCAGGCA CGCCAATGGC ATGAGCAGCA GGGATTCGAG
GGAACAATCG CGGTAAACGT TTCAGCAGTA CAATTCCGTC AGAATGATTT CACGGATGTT
GTACTGCGCG CACTTGCAGA CAGCGGTCTT TCGCCAGAAT GCCTGGAACT CGAGTTGACC
GAAAGTGTGG TGATGCATGG AGTGGAATCG GCTACACAGA AAATGTGCTT CCTGGAGTCC
CGGGGTATAA AACTGGCTAT TGACGATTTC GGTACCGGCT ATTCCAGTTT GTCCTATTTG
CGGCAATTTG CCATTGACCG GCTAAAAATA GATCGAAGCT TCGTTCGTGA TCTCCCCCAG
GACACTGATG CCAAAGCTAT TATTCGCGCC ATTGTGGGAA TGGGGCGCAG CCTTGGTTTA
CGCGTGATAG TTGAAGGTGT GGAGACGGAA GGGCAAGCGG AGTATTTGCG AAGCGTTCAA
TGCGATGAAA GCCAAGGCTA TCTGTATGCA AGGCCCATGA GGCCAGATGA TTTTGAGGCT
TGGGTAAAAA CTAGGAATCC GGTTTAG
|
|---|
| Protein sequence | MKETLELSQS LSLLETVLKA TADGLLVADK LGKVLCYNQL YVNMWHIPGE LLAHARHQAI
LDYCAGQLRD PEQFLHSTEE IYGTWTPESF DIFEFCDGRV FERYTKTKTL EGSNMVRVWS
FRDITERRQG ESYKAQLAAI LDSSNDALII KDLNGIISGW NTGAERIFGY RASEIIGSPI
SRLIPPDRLE EEDRIMNLVK SGKQTNHLET VRWGKGKKPI DVSVTISPVK DNAGHIVGAY
KIAHDITQRK ESLKRIEYLA HYDLLTGLPN RALFTDRMRI AIENASRYAF RLALLFVDLD
RFKLINDSLG HAIGDKLLRA VAERMQSTVR QADTVSRLGG DEFVVLLGRI HTATEAARVA
EKLIAVLSQP YQIEQHELLL TASVGISIYP DSGKDVNSLM RNADVSMYSA KGQGRNRYQF
YSEDLTSGAD ERLRLEYDLR SALARDEIFP VYQPQLELAT GRVVGVEALM RWKHPERGLV
SPASFIPVAE DSGLILSLGE HILRESCLQA RQWHEQQGFE GTIAVNVSAV QFRQNDFTDV
VLRALADSGL SPECLELELT ESVVMHGVES ATQKMCFLES RGIKLAIDDF GTGYSSLSYL
RQFAIDRLKI DRSFVRDLPQ DTDAKAIIRA IVGMGRSLGL RVIVEGVETE GQAEYLRSVQ
CDESQGYLYA RPMRPDDFEA WVKTRNPV
|
|---|
| |