| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2440 |
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| Symbol | |
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| ID | 3774459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 2515544 |
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| End bp | 2517694 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637800888 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_401457 |
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| Protein GI | 81301249 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.225847 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0323804 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACAAC TCAGCAAGTC GTTGTCCTTT GATGGACGCG ATATTCGGCT GGAGCTGGGC
CTGTTCGCCC CACAGGCTGG AGGTTCCGTT CTGATTAGCT CAGGGGACAC CGCCGTTTTG
GTGGCTGCGA CCCGTTCGAC GGCACGGGAA GGGATTGATT TTCTGCCGTT GACTGTCGAT
TACGAAGAGC GGATGTATGC AGCCGGTCGC ATTCCGGGCG GCTTTCTCCG CCGTGAAGGG
CGTCCTCCTG AACGCGCAAC CCTGACTAGC CGCTTGATCG ATCGCCCGCT GCGTCCGCTG
TTCCCCAGTT GGCTGCGGGA TGATCTGCAG GTCGTGGCAA CCACACTCTC GATGGACGAG
ACAGTTCCCC CCGACGTTCT GGCGGTGACT GGCGCTTCGA TCGCTACCTT AGTTGCCAAA
ATTCCCTTCT ACGGGCCAAT GGCAGCGGTA CGAGTAGGCT TAGTTGGCGA TGATTTCATC
ATCAACCCCA CCTACCGCGA GATTGAAAAA GGCGACCTTG ACCTCGTAGT GGCTGGTACC
CCCGCTGGGG TGATCATGGT CGAGGCTGGA GCTAACCAGC TGCCAGAAGC CGACGTGATC
GAAGCGATCG ACTTTGGCTA TGAAGCCGTT CAAGAGTTGA TTAAGGCTCA GCAGAGTCTG
CTGGCGGAGT TGGGCATCGA GCAGATCCTG CCGGAAGCAC CCAACGCCGA CAATACCCTC
GAGAACTTCG TCCGCGATCG CGCCAGTAGC GGTGTTCAGC AAGTGCTGCA GCACTTTAGC
TTCACCAAGT CGGAGCGCGA TGCAGCCTTA GATGAGGTTA AAGCCAGCGT CGTTGAAGCG
ATCGCTGCTC TGCCAGAAGA GGATCCGGTT CGTAGCGTCA CTGCCGCAGA ACCCAAAGCG
CTGGGCAACA CCTTCAAAGC CCTGACCAAA ACCTTGATGC GTCAGCAAAT CCTGCGCGAT
GGTGTTCGGG TCGATGGTCG GAAACTCGAT CAGGTGCGGC CGATCTCCAG TCAGGTTGGC
TTGCTGCCGC CGCGAGTCCA TGGTTCTGGC CTGTTTCAGC GGGGTCTGAC GCAGGTGCTG
TCGATCGCGA CTCTCGGCAC GCCTGGGGAT GCGCAAGAAC TGGATGATCT GCATCCCGAC
ACCCAGAAGC GCTACCTGCA TCACTACAAC ATGCCCCCCT ATTCCGTTGG CGAAACGCGG
CCGATGCGAT CGCCCGGTCG GCGGGAAATT GGCCATGGCG CTTTGGCAGA GCGCGCGTTG
CTTCCCGTGT TGCCGTCCAA GGAAGAATTC CCCTACGTGA TTCGGGTGGT TTCCGAGGTG
CTGTCCTCCA ACGGCTCCAC CTCGATGGGC TCCGTCTGCG GCTCGACGCT GGCGCTGATG
GATGCTGGCG TCCCCATCAA AAAGCCGGTC AGCGGCGCAG CCATGGGGCT GATCCGCGAA
GGCGATGAGT ACCGTGTCCT GACCGACATC CAAGGGATTG AAGACTTCTT GGGTGACATG
GACTTTAAGG TAGCGGGCAC CGATCAGGGC ATTACGGCTC TGCAGATGGA TATGAAAATC
CATGGTCTGC CCTTAGAGAT CATTGCGGAT GCCATCAACC AGGCGAAGCC GGCGCGTTTG
CACATCCTCA ACAAGATGCT GGAAGCGATC GCCACGCCTC GGGCTGACCT TTCGACCTAT
GCGCCCCGCC TGTTCCGGAT TCAAATCAAT CCTGAGCAAA TTGGCTTGGT CATTGGTCCT
GGTGGCAAAA CAATCCGCTC TATCACTGAG CAAACTGGTG CCAAGATCGA CATCGAAGAT
ACGGGAGCCG TGACCATCTC GGCAGTCGAT GCTGATTCGG CGCTGCGAGC GAAGTCGATC
ATCGAAGGCA TGACCCGCAC AATCACTGCC GGCGATGTCT ACATCGGCAA AGTGACCCGC
ATCATCCCGA TTGGAGCCTT TGTGGAGTTC CTGCCGGGCA AAGAAGGCAT GATTCACATC
TCGCAAATTG CCGATTATCG GGTGGCTCGT GTTGAAGATG AGCTGACGGT GGGCGATGAG
GTCGTGGTCA AAGTCCGCGA GATTGACCAA AAGGGTCGGG TTAACCTCAC CCGTAAAGGG
ATTGATCCGG AGGAAGTCTC AGCAGCACGG GCGGCTGTCG AAGCGTCTTA G
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| Protein sequence | MPQLSKSLSF DGRDIRLELG LFAPQAGGSV LISSGDTAVL VAATRSTARE GIDFLPLTVD
YEERMYAAGR IPGGFLRREG RPPERATLTS RLIDRPLRPL FPSWLRDDLQ VVATTLSMDE
TVPPDVLAVT GASIATLVAK IPFYGPMAAV RVGLVGDDFI INPTYREIEK GDLDLVVAGT
PAGVIMVEAG ANQLPEADVI EAIDFGYEAV QELIKAQQSL LAELGIEQIL PEAPNADNTL
ENFVRDRASS GVQQVLQHFS FTKSERDAAL DEVKASVVEA IAALPEEDPV RSVTAAEPKA
LGNTFKALTK TLMRQQILRD GVRVDGRKLD QVRPISSQVG LLPPRVHGSG LFQRGLTQVL
SIATLGTPGD AQELDDLHPD TQKRYLHHYN MPPYSVGETR PMRSPGRREI GHGALAERAL
LPVLPSKEEF PYVIRVVSEV LSSNGSTSMG SVCGSTLALM DAGVPIKKPV SGAAMGLIRE
GDEYRVLTDI QGIEDFLGDM DFKVAGTDQG ITALQMDMKI HGLPLEIIAD AINQAKPARL
HILNKMLEAI ATPRADLSTY APRLFRIQIN PEQIGLVIGP GGKTIRSITE QTGAKIDIED
TGAVTISAVD ADSALRAKSI IEGMTRTITA GDVYIGKVTR IIPIGAFVEF LPGKEGMIHI
SQIADYRVAR VEDELTVGDE VVVKVREIDQ KGRVNLTRKG IDPEEVSAAR AAVEAS
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