Gene Synpcc7942_2168 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_2168 
Symbol 
ID3773725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp2248681 
End bp2251065 
Gene Length2385 bp 
Protein Length794 aa 
Translation table11 
GC content52% 
IMG OID637800613 
ProductATP-dependent DNA helicase Rep 
Protein accessionYP_401185 
Protein GI81300977 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID[TIGR01073] ATP-dependent DNA helicase PcrA 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.63993 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAGCG ACTTTCTAAG CCAGCTCAAT ACCTCCCAAC GTCGAGCCGT CGAACACTAC 
AGCGGGCCGC TGTTGGTGGT TGCTGGTGCT GGTTCTGGCA AAACGCGGGC ACTCACCTTT
CGGATTGCCC ATCTGCTGCG ACAGCATCGG GTCGATCCAG AAAACATTTT GGCGGTGACC
TTCACCAATA AAGCGGCGAA GGAAATGAAG GAGCGGCTGG AGCGCTTATT TGCTCAGCAA
CTGGCGGAGT TGCAGTACGG CCAGCCCTTC ACGACACTGC GAGAAATAGA AAAAACTCAA
CTGCGATCGC GTGTCTATCG CGAAGTTACC AAGGATTTGT GGATTGGCAC TTTCCACGCA
ATTTGTGCAC GGATTCTTCG CTTTGATATC GACAAGTATT GCGATCCCAA TGGCCGCCGT
TGGACAAAGC AGTTCTCCAT CTTTGATGAA AATGATGTCC AAGGCTTAAT CAAAGAGATT
GTTGGCAATC AGCTCAATTT AGATACCAAG AAGTTTGAGC CAAAATCTGT TCGCTACACA
ATCAGCTCGG CTAAGAACAA TGGTTGGTCA CCCGATGAAT TTGAGCGCCA GCAGCCGAAC
TATCGGGGCC GCGTGATCGG TGAGGTCTAT CGGCGTTATT TAGATCAACT AGCGGCAAAT
AATGCTCTTG ATTTCGATGA CTTGTTGCTG ATTCCAGTGC AACTCTTCCG GCAAAACGAA
CAGGTTTTGG CCTATTGGCA TCAGCGCTTT CGCCATGTTT TGGTTGATGA GTATCAGGAT
ACAAACCGCA CTCAGTACGA TTTGATTCGG CTGCTGACAA CGAATGGTGC TGAAACGCGA
GATTTTGATC AGTGGAATCA TCGCTCAGTC TTTGTCGTAG GCGATGCTGA TCAGTCAATC
TATTCTTTCC GAGCCGCAGA CTTCACCATT CTGATGGGCT TTCAGGATGA TTTTGGCGAT
CGTCTGCCGG ATGATGACAC TCGCACGATG GTCAAGCTGG AAGAAAATTA TCGTTCGACT
GAAAACATTC TTCAGGCTGC CAATGAGCTA ATTCGTAACA ACACTGAGCG CATCGATAAG
GTTTTGCGCC CCACCCGAGG TAGTGGCGAA GCGATCGCCT GCTATCGGGC TGACGATGAA
ATGGCCGAAG CGGAGTATGT TGTTCAACAA ATTCGCCAGC TTGAGCAACA GCATCCTGAG
TTGAATTGGG GCGATTTTGC AATTCTCTAC CGCACTAACG CTCAATCGCG AGCCTTTGAA
GATTCTCTCG TTCGCTGGAA TGTTCCCTAC ACCGTCATTG GTGGCTTGCG GTTCTATGAT
CGCCGCGAAG TCAAAGATAT CTTGGCCTAT CTGCGGGCGA TCGCCAATCC CTTCGATGCG
GTTAGCTTAC TACGGGTGGT GAACGTTCCT AAACGCGGCG TGGGCAAAAC CACGATTGGC
CGATTGGTTG ATGCTGCGCA AGAGCTAAAT GTACCCCTTT GGGAAATCCT GAGTGATTCC
GAAACGGTGC AAAACCTGGC GGGGCGATCG GCGAAAGGCA TCCTAGAGTT TGCTAATTTA
GTTCAGCATT TTCAAGATCA AGCAGATGAA TTACGCCCCT CCGAATTGAT TCGCCAGCTC
TTAGAAGCAT CTGGTTATAT TGCTGAATTA CAACGCAGCG GCACTGATGA AGACGAGGAC
CGTCGTCGGA ACTTGGAAGA GTTGGTGAAT GCAGCTGTTC AACATGAGGA GGAGAATGAT
GACCCTAGCC TGATTGGCTT TTTGGGAACA GCTTCACTAG CCTCAGATGC AGATAACAAA
GAAGCGAACC AGCAAGTCTC ATTAATGACT TTGCATGCTT CAAAAGGCCT TGAGTTTCCG
GTTGTTTTTC TAGTTGGACT AGAACAGGGC CTCTTCCCCA GTTTCCGATC GCTCGACGAT
CCGCGCGCCG TTGAAGAAGA ACGACGCCTC TGCTACGTCG GCATCACACG CGCCCAAGAG
CGACTGTTCT TGACCCATGC CAGTGCTCGT CGTCTGTGGG GTGGAGGTCG AGAGCCCGCC
ATTCCCTCCA ATTTCCTGAG TGAACTACCG GCAGAACTGA TCGTGGGTCA CTCACCACAG
ACCCGTCGTC AGACCCAAGC AAACTTCAAG CCACCGGTTA CCCATGAGCG CCGCGCCAGC
CTGCGCGATC GCGTGGCCGC GAATGCAGCC AAAGTGCAAC AAGTTCAGCA ACCGGCCCGC
CATTGGCAAG TCGGCGATCG CCTTCAGCAT CGTCAGTTTG GCGTTGGACG CATCACCCGA
ATTTTCGGTG CGGGCGATCG CCAATCGATT GTGGTCCAGT TCAGCGGCGC GACAGGTCAG
CGCATCCTCG ATCCACGCCT AGCACCGATT GAACCCCTCG GTTGA
 
Protein sequence
MSSDFLSQLN TSQRRAVEHY SGPLLVVAGA GSGKTRALTF RIAHLLRQHR VDPENILAVT 
FTNKAAKEMK ERLERLFAQQ LAELQYGQPF TTLREIEKTQ LRSRVYREVT KDLWIGTFHA
ICARILRFDI DKYCDPNGRR WTKQFSIFDE NDVQGLIKEI VGNQLNLDTK KFEPKSVRYT
ISSAKNNGWS PDEFERQQPN YRGRVIGEVY RRYLDQLAAN NALDFDDLLL IPVQLFRQNE
QVLAYWHQRF RHVLVDEYQD TNRTQYDLIR LLTTNGAETR DFDQWNHRSV FVVGDADQSI
YSFRAADFTI LMGFQDDFGD RLPDDDTRTM VKLEENYRST ENILQAANEL IRNNTERIDK
VLRPTRGSGE AIACYRADDE MAEAEYVVQQ IRQLEQQHPE LNWGDFAILY RTNAQSRAFE
DSLVRWNVPY TVIGGLRFYD RREVKDILAY LRAIANPFDA VSLLRVVNVP KRGVGKTTIG
RLVDAAQELN VPLWEILSDS ETVQNLAGRS AKGILEFANL VQHFQDQADE LRPSELIRQL
LEASGYIAEL QRSGTDEDED RRRNLEELVN AAVQHEEEND DPSLIGFLGT ASLASDADNK
EANQQVSLMT LHASKGLEFP VVFLVGLEQG LFPSFRSLDD PRAVEEERRL CYVGITRAQE
RLFLTHASAR RLWGGGREPA IPSNFLSELP AELIVGHSPQ TRRQTQANFK PPVTHERRAS
LRDRVAANAA KVQQVQQPAR HWQVGDRLQH RQFGVGRITR IFGAGDRQSI VVQFSGATGQ
RILDPRLAPI EPLG