| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_2004 |
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| Symbol | |
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| ID | 3774191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 2073028 |
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| End bp | 2073618 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637800449 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_401021 |
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| Protein GI | 81300813 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTTG GATTCTCCAG TCCAACTGGC ACTTCCAACA GCGACGATCA AGATCTGTGG
TCAGAGCTCC AACAGGGGCA GGTCGCGGCC CTTGCACGTC TGTACGATCG CCATGCCGGT
CTGGTCTACG GCATCGCCAT GCAGGTTTTA GGCAATCCTC AAGAGGCAGA GGATCTCACC
CAAGATATTT TTATTCGCTT AGTCGATCGC CAGCACTCTC ACTACGATTC CAAACGCGGA
TCCCTCAGGA CTTATTTAGC CGTACTGACA CGTTCGCGAG CCATCGATCG ATTGCGATCG
CGGCGCACCC AAGCTTCAGC GATCGAGCGT GTGCAAAACC AGGTCAAACA AGAAGCGACG
GAGGATCCCC CAATTGCCAG TTTGGGGGCC GCAGAAACCA GTGCAGAAGT CCAGAAGGCC
CTAGCACAGC TGCCGGAGAG CCAACAACAA GTGTTGCGAC TGGCCTACTA CGAAGGGTTG
TCCCAATCGG ATATTGCAGA ACGCCTCAGT GAACCGTTGG GAACGATCAA AGCAAGAGCC
CGCCGCGGCC TGCTCAAGTT AAGGCAAATG CTTCAAGATG ATCTGAGCTG A
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| Protein sequence | MSLGFSSPTG TSNSDDQDLW SELQQGQVAA LARLYDRHAG LVYGIAMQVL GNPQEAEDLT
QDIFIRLVDR QHSHYDSKRG SLRTYLAVLT RSRAIDRLRS RRTQASAIER VQNQVKQEAT
EDPPIASLGA AETSAEVQKA LAQLPESQQQ VLRLAYYEGL SQSDIAERLS EPLGTIKARA
RRGLLKLRQM LQDDLS
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