| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1923 |
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| Symbol | |
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| ID | 3775286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1999240 |
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| End bp | 1999896 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637800365 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_400940 |
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| Protein GI | 81300732 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.802306 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCAT CTGTTCCCTG TACTTGGTCT AATTCCGAGG CTACAGGTTC TCGCTTGCCC
CTCTCCGCTG ATCAGCTTCC GCTCGATGAA CTGGTGCTGC GCTGCCAAAA ACAGCCCAGC
GATCGCCTTG CGTTTACGGA GCTGGTGCGG CGCTACCAAA ACCACGTGGA GCGCCTGATC
TATCACCTAG CGCCCGACTG GGAAGATCGG GCTGATCTGG TGCAGGAAGT CTGGATTCGC
GTCTATCGCA ATCTCAAAAA TCTGCAGGAA CCTCGCAGCT TCAAAGGCTG GCTCAGCCGC
ATTGTCACTA ACTTGTTCTA CGACGAGCTG CGGCGGCGCA AGCGTCGCCA GCCGGCCCTC
TCGCTGGATG CCCCCCGCCT AATCGGCAAC GATCAGCTGG ATTGGGAACT GCCAACCGAG
CAGGCAGGCC CAGACGAGGA GTTGGAAAAA CAAGAGTTCT ACAACGAATT GCGGCGAGCG
ATCGCGGGGT TGCCTGAAAG TTTCCGCACC ACGATCGTGC TGCGCGAAAT CGAAGGCTTG
GCCTACGAAG AGATTGCTGC CGCAACGGGG GTTTCTCTCG GGACTGTGAA ATCTCGCATC
GCCCGCGCCC GCCAGCGTCT CCAAGACCAA CTCAGCGGTT ATCTAAAACT CTTCTAA
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| Protein sequence | MTASVPCTWS NSEATGSRLP LSADQLPLDE LVLRCQKQPS DRLAFTELVR RYQNHVERLI
YHLAPDWEDR ADLVQEVWIR VYRNLKNLQE PRSFKGWLSR IVTNLFYDEL RRRKRRQPAL
SLDAPRLIGN DQLDWELPTE QAGPDEELEK QEFYNELRRA IAGLPESFRT TIVLREIEGL
AYEEIAAATG VSLGTVKSRI ARARQRLQDQ LSGYLKLF
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