Gene Synpcc7942_1896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1896 
SymbolargJ 
ID3775259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1968654 
End bp1969898 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content59% 
IMG OID637800337 
Productbifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 
Protein accessionYP_400913 
Protein GI81300705 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1364] N-acetylglutamate synthase (N-acetylornithine aminotransferase) 
TIGRFAM ID[TIGR00120] glutamate N-acetyltransferase/amino-acid acetyltransferase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00893518 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCAG CATGGCAGGA AATCTCGGGT GGTTTGACCG CACCGCGTGG CTTTCAGGCT 
GCAGGAATTA CGGCGGGCCT CAAAGCGTCG GGGCAGCCGG ATTTGGCGCT GATTGTCTCC
GAGAGTGATG CGATCGCGGC CGCCGTCTTT ACGACTTCGC AAGTGCGAGC TGCCTGTGTG
GACTTCAGCC GTCAGCAACT AGATGGCAAC AGCATCGCCC GGGCAATTCT CTGCAACTCG
GGGCAAGCCA ATGCTGCTAC CGGTGATCAA GGCTGGTCTG ATGCCGTCGA GTCGGCGGAA
CAACTGGCGC AAGCCCTGCA GATTCCTAGT CATCAAGTGT TGGTGGCCTC CACGGGGGTG
ATTGGCCAGC GAATCAAGAT GGAGGCTCTG CGTACCGGTA TTCCTCAGGC GATTGCAGCG
CTGTCTCCTG AAGGCGGACC TGCTGCTGCC CAAGCAATCC TGACCACGGA TCTGGTCGCC
AAACAGATTG CCCTGGAGCT GCCGCTGGGC GATCGCACCG TGCGGATTGG AGGCATCGCC
AAAGGCTCCG GCATGATCCA TCCCAACATG GCGACGATGC TGTCGTTCAT CACCTGTGAT
GCGGCGGTTT CCCCTCAGCT CTGGCAGGAA ATGCTGAGCC GAGCGGTCGA TCGCAGTTTC
AACCAGATCA CCGTCGATGG CGACACCAGC ACGAATGACT GTGTGTTTGC CCTCGCTAAC
GGCCAGTCGC GCACACCGGC GATTACCGAA CGCGGCCCGA TCGCAGATCA ACTGGAAGCG
ATGTTGACTG CTGTTTGTCA GCACTTGGCG AAAGCGATCG CTCGTGACGG AGAAGGGGCT
ACCTGCCTGA TTGAAGTGCA GGTCAAAGGT ACGGCAGATG ATGCAGCGGC TCGGGCGATC
GCCCGCACGA TCGCGGGTTC TTCATTGGTG AAATCGGCAA TTTTTGGTCG TGACCCCAAC
TGGGGTCGGA TTGCGGCTGC TGCGGGTCGA GCTGGCGTCC AGTTCAACTC GGAAAATCTG
GGGGTTCGGC TGGGTGAGTT TGAACTACTC CGCAATGGCC AGCCGCTGCC CTTCGATCGC
AATGCTGCCA GTCAATACCT CCGCGATCGC GCTGCAGGCG CTTACCTGCA AGACGATACG
GTACTAATCC AAGTAGACGT GGGTGCTGGT ACTGGGCAAG GGGTTGCTTG GGGCTGCGAC
CTCAGCTATG ACTATGTCCG CATCAATGCT GAATACACCA CCTAA
 
Protein sequence
MQAAWQEISG GLTAPRGFQA AGITAGLKAS GQPDLALIVS ESDAIAAAVF TTSQVRAACV 
DFSRQQLDGN SIARAILCNS GQANAATGDQ GWSDAVESAE QLAQALQIPS HQVLVASTGV
IGQRIKMEAL RTGIPQAIAA LSPEGGPAAA QAILTTDLVA KQIALELPLG DRTVRIGGIA
KGSGMIHPNM ATMLSFITCD AAVSPQLWQE MLSRAVDRSF NQITVDGDTS TNDCVFALAN
GQSRTPAITE RGPIADQLEA MLTAVCQHLA KAIARDGEGA TCLIEVQVKG TADDAAARAI
ARTIAGSSLV KSAIFGRDPN WGRIAAAAGR AGVQFNSENL GVRLGEFELL RNGQPLPFDR
NAASQYLRDR AAGAYLQDDT VLIQVDVGAG TGQGVAWGCD LSYDYVRINA EYTT