| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1894 |
|---|
| Symbol | |
|---|
| ID | 3775257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | - |
|---|
| Start bp | 1966520 |
|---|
| End bp | 1967599 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637800335 |
|---|
| Product | integral membrane protein of the ABC-type Nat permease for neutral amino acids |
|---|
| Protein accession | YP_400911 |
|---|
| Protein GI | 81300703 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0493707 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGGCT ACATCATCCT GCTGGTCTGC ACGATCGCGT TGTTTGCCCT GTTCTGTGTG
GGGCTGAATT TGCACTGGGG CTATACGGGG TTGCTCAACT TTGGCCATGT GGCTTTTCTG
CTGATTGGGG CCTACAGTGT TTCCCTGCTG GCGCAGCAGG GCTGGCCGCT CTGGCTCGCC
GCGATCGCAG GAGTGACTCT AGCGGCTCTC TTGGGCTTGG TGATGGGAGT GGCGAGCTTG
CGACTGAGTC AGGATTACCT CGGCATCGTC ACGGTTGGAC TAGCGGAAGT ACTGCGCATT
TTTGTCCAAA ACGAAACGGG CTTGACTCAA GGCAGCTTTG GCGTTCAGGC TTATCCGATC
ATTCTGCAGG GCTGGGAACC GCCAATCTGG CAAACTCATT TACTGGTTGT GGGGCTGCTG
GCGATCGCTG CTTGGGGCTA TTGGCAACTG TGGCAGTGGT GGCGCAGTAG CGCGAGTCGG
GGGAAACATT GGCTGGCGAT CGTCGCCCTA GGGAGCAGTC TGATCGTTCT GCCGCCTGCG
GCCTTGGGAC TAGCGGACTA TGAACGCTAT CCGCGCTCGG GGCAAATGCT GCTGTTGCTG
GGGGCGCTCT GGCTGACAGT CGCAGCGGTT GACCGCTTGG TGCGATCGCC CTGGGGGCGG
GTGCTCAAGG CGATTCGCGA AGATGAAACG GTGGCGATCG CCCTCGGGAA GAATGTCCTG
TCCTACAAGC TGCAATCCTT GGCACTGGGC GGGGCGATCG CGGGGCTAGC TGGAGTGTTC
TATGCTTGGC AACTCACCGC CATCTACCCC GATAATTTCC GGCCTCAGCT GACCTTTGAC
GTCTGGACGA TGCTGGTACT GGGTGGGACT GCCCACCGGT TTGGACCTGT CCTAGGCGCA
GCGGTGTTTT GGCTCTACGA CAGTCTGACG CGATTTCTCC TCCCGGCGAT CCTACCTTTG
GATGGATCGC AGATTGGTGC CTTGCGAATT GCCTTGGTGG GACTGTTGTT AATGGCCTTG
ATGATTTGGC GCCCCCAAGG CATCTTGGGA CGACGGGAGG AACTGAGTCT TGGCCGCTGA
|
|---|
| Protein sequence | MIGYIILLVC TIALFALFCV GLNLHWGYTG LLNFGHVAFL LIGAYSVSLL AQQGWPLWLA
AIAGVTLAAL LGLVMGVASL RLSQDYLGIV TVGLAEVLRI FVQNETGLTQ GSFGVQAYPI
ILQGWEPPIW QTHLLVVGLL AIAAWGYWQL WQWWRSSASR GKHWLAIVAL GSSLIVLPPA
ALGLADYERY PRSGQMLLLL GALWLTVAAV DRLVRSPWGR VLKAIREDET VAIALGKNVL
SYKLQSLALG GAIAGLAGVF YAWQLTAIYP DNFRPQLTFD VWTMLVLGGT AHRFGPVLGA
AVFWLYDSLT RFLLPAILPL DGSQIGALRI ALVGLLLMAL MIWRPQGILG RREELSLGR
|
|---|
| |