Gene Synpcc7942_1840 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1840 
Symbol 
ID3774415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1906920 
End bp1907426 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content57% 
IMG OID637800281 
Producthypothetical protein 
Protein accessionYP_400857 
Protein GI81300649 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0702496 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAGTGT GGCAACGCTG GGTCAAAGGA TTGGTACTCG CGATCGCGAT CGCATTGGTT 
GTGGCGCCGA CTGCTGCTTG GGCAGCCAGT TCCGCAGCGA TTCGTGCCTT TGATGATGCG
GAGGTCACCC GCCAAGACTA TTCCGGCCAA AGCCTGATTC AAGCGGAATT TGCCAGCGTC
CGGCTCAAGG GCGTCAGCTT CCGAGGCGCT GATTTGCGCG GCGCAGTTTT CAATGGCGTC
GATCTGCGTG AGGCCAACTT TGAAGATGCG GATTTCACCG ACGGCATCGC CTACGTCAGC
GATCTGCGCA ATGTCAATTT CCGCAATGCC AATCTCACCT CGGCCATGTT GCTGCAATCA
GAACTGCAAG GCTCTGATGT GACCGGTGCT GATTTCAGCT TTGCGGTGCT CAGCAAGCAA
CAAATTACAG CGCTCTGTGA AACTGCCAGC GGCACTAACC CCAAAACGGG CGCGGATACC
CGTGAGTCGC TCGGCTGCCC CGACTAA
 
Protein sequence
MKVWQRWVKG LVLAIAIALV VAPTAAWAAS SAAIRAFDDA EVTRQDYSGQ SLIQAEFASV 
RLKGVSFRGA DLRGAVFNGV DLREANFEDA DFTDGIAYVS DLRNVNFRNA NLTSAMLLQS
ELQGSDVTGA DFSFAVLSKQ QITALCETAS GTNPKTGADT RESLGCPD