Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_1794 |
Symbol | |
ID | 3774369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | + |
Start bp | 1864768 |
End bp | 1865946 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637800235 |
Product | succinyldiaminopimelate transaminase |
Protein accession | YP_400811 |
Protein GI | 81300603 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.455812 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0036927 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCCTAACT TTCGTTTGTC GCAGCGGCTC GCACCCTTAC AACGCAATGT TTTTGCCGAT ATGGATCGGG CCAAAGCGGT AGCGATCGCA GCGGGTCGGG AGGTCATTGA CCTCTCCCTC GGCTCCTCGG ATCTGCCTGC ACCAGATCAT GTGGTCGCTG TGATCGCGGC TAGTCTGCAA GATCCCAGCA CCCACGGCTA TCTGCTGCAT CAGGGCACAC TCCCGTTTCG GCAGGTCGCG GCGGCTTGGT ATGAACGCAA GTTCGGCCTC GGTGTTGATC CCGAAACGGA AGTCCTGCTG CTAATAGGTT CTCAAGAGGG GACGGCCCAC CTACCGCTAG CGGTGATGGA GCCTGGCGAG ATTGCTCTGC TCCAAGATCC GGGCTATCCC TCCCATGCAG GCGGAGTCTA CCTAGCGGGT GGAGAGATCT ATCGCCTCCC GACGACGGCC GATCGCGGCT TTTTGCCAGA CTTCAGTACG ATTCCAACTG AAATTCTGTC GCGATCGCGG CTACTCGTCC TCAGCTATCC TCACAATCCG ACGACCGCGA TCGCACCGCT AGCCTTTTTT GAAGAGGCTG TAGCTTTCTG CCGTCACCAT CAACTGGTGC TCGCCCACGA CTTCCCCTAT CCCGACCTCG GTTTTGATGG GGTTGAGGTA CCCTCAATTT TCCAAGCTGA TCGCCAGAAA CAGCAGGCGA TCGAGTTCTT TTCGCTTTCC AAGTCCTACA ACATGGGCGG CTTTCGGGTG GGCTTCGCGA TCGGCAATGC GGAGTTGATT GGAGCCCTGC GGCGACTCAA AGCCGTGGTC GACTTCAACC AATATCAAGG CATTTTGGCC GGCGCGATTG CTGCGCTTAC TGGCCCACAG GCTTGTGTCG AAGCGACCCG TCAACGCTTC CGCGATCGCC GCGATATCTT CATCAATGCA CTGGCCGCTA CCGGCTGGAC GATTCCGAAG CCAGTGTCAA CCATGTACCT CTGGGCACCG CTGCCGGAAC CGTGGCAAAC GCGATCGCTG GAGTTTTGCG AAAAACTTGT CGCCGAAACC GGGGTCGCCG CTTCGCCGGG CATCGGCTTT GGCGACTGCG GTGAAGGCTT TGTTCGCTTT GCCCTAGTAC ACGACCGCGA TCGCCTCGAA GAAGCTGCCC GCAGGATCAC GCAGTTCCTC GCCCGCTAA
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Protein sequence | MPNFRLSQRL APLQRNVFAD MDRAKAVAIA AGREVIDLSL GSSDLPAPDH VVAVIAASLQ DPSTHGYLLH QGTLPFRQVA AAWYERKFGL GVDPETEVLL LIGSQEGTAH LPLAVMEPGE IALLQDPGYP SHAGGVYLAG GEIYRLPTTA DRGFLPDFST IPTEILSRSR LLVLSYPHNP TTAIAPLAFF EEAVAFCRHH QLVLAHDFPY PDLGFDGVEV PSIFQADRQK QQAIEFFSLS KSYNMGGFRV GFAIGNAELI GALRRLKAVV DFNQYQGILA GAIAALTGPQ ACVEATRQRF RDRRDIFINA LAATGWTIPK PVSTMYLWAP LPEPWQTRSL EFCEKLVAET GVAASPGIGF GDCGEGFVRF ALVHDRDRLE EAARRITQFL AR
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