Gene Synpcc7942_1745 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1745 
Symbol 
ID3775445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1815848 
End bp1816393 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content57% 
IMG OID637800184 
Producthypothetical protein 
Protein accessionYP_400762 
Protein GI81300554 
COG category[T] Signal transduction mechanisms 
COG ID[COG3448] CBS-domain-containing membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0908487 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACCGC GATCGCTCAG ACGGCTGCAT TGGCATTGGG AGCAACAACG ATCGCAATCA 
GACCTGATTC AGCCCCGCTA CTCTCGGCAA CAAGTGCTGG CATCTTGGCT CGGAGCCCTC
GTCGGTATTG GTCTTTTGGG CTGGTTGACC CAAGCGAGTG GCTACCCTTT GGTAGCAGCT
CCCATGGGTG CGACCTCGGT GTTGCTGTTC GGCTTACCCA ATAGTCCTTT GGCGCAGCCG
CGCAATGTCA TTTTGGGCAA TGGGCTCGGT GCTCTAATTG CTGTTCTGTG TGTGTTGCTC
TTGGGTGCTA ACCCTTGGAG CATGGGCTTT GCTGTCGGTG TCACGATCGC TCTCACCCAA
TTGTTGCGCT GTGTCCATCC TCCGGCGGGT GCAGTTGCTC TCCTCGGAGT GATTGTCAAA
GCGAAGTGGG CTTACATCCT GCTGCCTGTT TTGAGCGGAT CGATTCTCCT GTGCGTGATT
ACGGCGCTCT ATAGTCGCTG GGCACCCGAT CGCCATCATC GCCGCTATCC TGTGCACTGG
CTCTAG
 
Protein sequence
MAPRSLRRLH WHWEQQRSQS DLIQPRYSRQ QVLASWLGAL VGIGLLGWLT QASGYPLVAA 
PMGATSVLLF GLPNSPLAQP RNVILGNGLG ALIAVLCVLL LGANPWSMGF AVGVTIALTQ
LLRCVHPPAG AVALLGVIVK AKWAYILLPV LSGSILLCVI TALYSRWAPD RHHRRYPVHW
L