| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1557 |
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| Symbol | |
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| ID | 3774981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1613464 |
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| End bp | 1614396 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637799990 |
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| Product | principal RNA polymerase sigma factor SigA |
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| Protein accession | YP_400574 |
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| Protein GI | 81300366 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.110322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.483499 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAGTG CTTCGGCTCA TGCTGTCGCG ACGGCTCAGC GACGAACAAG AGATAACGTC
AGTTGGTATC TCAGCTCCAT CGGTCGGATT CCATTGCTCA CCGCCGATCA GGAGATCGAG
CTGGGGCAGA AAGTGCAGGT GATGATGAAC CTGCTGGAAG AAACTTCTAG CGATCGCACG
TTTACTGAGG CCGAAACCGC AGCGATCCAG CTGGGGCAGC GTGCTAAGGA ACGGATGATC
AAGGCCAACT TGCGTCTTGT GGTCTCTGTG GCCAAAAAGT ACCAAGGTAA GGGTCTTGAG
TTTCTTGACC TGATCCAAGA AGGCGCTCTC GGGCTAGAAC GTGCTGTCGA GAAATTTGAC
CCCTCCAAGG GCTACAAGTT TTCCACCTAT GCCTTTTGGT GGATTCGCCA GAGCATGACA
AGGGCGATCG CCTGCCAATC GCGCACTATT CGCCTGCCGG TTCACTTGAC TGAACGGCTG
AGCCAAATCC GCAAAGTGAC TCGGGAACTG GCGCACGAGC TAGGCCGTTT GCCCTCTCGC
CAAGAAATTG CAGAAGCGGT TCAGTTGCCA CTGAATGACC TCGAAACAAT TCTGCGTCAG
TCGCGCCAAT GCACCAGCCT AGATGCTCCA GTCAGTGGTG AAGATGGCAA GAGTTTCCTG
GGTGAGCTGA TTGCTGATCC CAACGGCAAT GAGCCCATGG ACATCATGGA AAATGCCATG
CAGCGCGAGC AGCTTGATGC TTGGCTCGAG CATCTCACGC CCCAAGAGCG CCAGGTGCTC
TATCTCCGCT TTGGACTGGG TGATGGCGAA CGTCATACCC TCGCTGAAAT CGGCCGGATG
ATGGAAGTCT CGCGCGAGCG GGTCCGCCAA GTTGAGGTCA AAGCGCTGCG TAAGCTCCGC
AACCTGACGA AGCGATCGCG GATTGCTGTC TAG
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| Protein sequence | MASASAHAVA TAQRRTRDNV SWYLSSIGRI PLLTADQEIE LGQKVQVMMN LLEETSSDRT
FTEAETAAIQ LGQRAKERMI KANLRLVVSV AKKYQGKGLE FLDLIQEGAL GLERAVEKFD
PSKGYKFSTY AFWWIRQSMT RAIACQSRTI RLPVHLTERL SQIRKVTREL AHELGRLPSR
QEIAEAVQLP LNDLETILRQ SRQCTSLDAP VSGEDGKSFL GELIADPNGN EPMDIMENAM
QREQLDAWLE HLTPQERQVL YLRFGLGDGE RHTLAEIGRM MEVSRERVRQ VEVKALRKLR
NLTKRSRIAV
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