Gene Synpcc7942_1521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1521 
Symbol 
ID3774945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1572849 
End bp1573646 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content59% 
IMG OID637799954 
ProductSec-independent protein translocase TatD 
Protein accessionYP_400538 
Protein GI81300330 
COG category[L] Replication, recombination and repair 
COG ID[COG0084] Mg-dependent DNase 
TIGRFAM ID[TIGR00010] hydrolase, TatD family 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0926881 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCTCG TCGATACTCA CGTTCACCTC AATTTCGACT GCTTCGCGGC AGAACTCGAT 
GCCGTAGCAG ACCAATGGCG CCAAGCGGGT GTAGCTCGCT TGGTGCATTC CTGTGTCACG
CCGGCGGAAT TTCCGGAACT CCAAGCCATC GCCGATCGCT TCCCGGAAGT GTCGTTGGCG
GTGGGCCTGC ATCCCCTTGA TGTAGAGCTT TGGCAGGATG GCACGGCAAC TGAAATTGAA
GCGTTAGCGC GGTCTGATCA ACGAGTCGTG GCGATCGGCG AAACGGGTTT GGACTTTTTC
AAGTCCGAAG ACCATGTGCG TCAATACGCC GCTGTAGAAG CCCAGTTGGC GATCGCGCGA
TCGCTGGATC TGCCGGTAAT TTTGCATTGC CGAGAGGCGG CTGCCGCCAT GGCGGCTGTT
TTGCGATCGC AGCAGTCTCA GCCCGGTACC CTGCGAGGGG TGATGCATTG CTGGGGCGGC
ACGCCGGAGG AAACCCGCTG GTTTCTCGAT CTTGGCTTCT ACGTCAGCTT CAGTGGCACC
CTCACCTTTG GCAAAGCAGA GACAATTCGC GACTCTGCCC GCCTTGTCCC CAGCGATCGC
CTACTGATTG AAACGGATTG CCCGTTTCTT GCGCCGGTTC CCAAACGGGG CAAGCGCAAC
GAACCCGCTT TCGTCCAGCA TGTGGCGGCT CGTATGTCTG AAGTTCGCTC TGAACCCCTT
GAGGCGATCG CGGCAACCAC CACCCGCAAC GCCTTCGACC TGTTCCGTTT ACCGACCGCT
CTACCGCAAG TTGCTTAA
 
Protein sequence
MQLVDTHVHL NFDCFAAELD AVADQWRQAG VARLVHSCVT PAEFPELQAI ADRFPEVSLA 
VGLHPLDVEL WQDGTATEIE ALARSDQRVV AIGETGLDFF KSEDHVRQYA AVEAQLAIAR
SLDLPVILHC REAAAAMAAV LRSQQSQPGT LRGVMHCWGG TPEETRWFLD LGFYVSFSGT
LTFGKAETIR DSARLVPSDR LLIETDCPFL APVPKRGKRN EPAFVQHVAA RMSEVRSEPL
EAIAATTTRN AFDLFRLPTA LPQVA