Gene Synpcc7942_1452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1452 
Symbol 
ID3773624 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1504758 
End bp1506194 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content60% 
IMG OID637799884 
ProductDNA repair protein RadA 
Protein accessionYP_400469 
Protein GI81300261 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1066] Predicted ATP-dependent serine protease 
TIGRFAM ID[TIGR00416] DNA repair protein RadA 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.00987951 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCGCGAT CGCGAAGCGA ATATGTATGT CAAAACTGCG GCCATCGTGC ACCGCGTTAC 
GTCGGCCGCT GTCCCGCCTG CGAAAGCTGG AATAGCCTCG TGGAGGAAGC AATCGCGCCA
ACGGCTAAGA CGGCGATCGC GACCGTCTTA CCTTCCCGAC AACGCCGCGA TCGCTTAGCT
GAAGCCCCAC CCCAAGCGGT TGCTGCCCAG CCCCTCAGTG CGATCGCGGA TGTCAGTCAG
CAGCGGATTG CCTCAGGTTC TGGCGAGTTC GATCGGGTTC TCGGTGGGGG GTTAGTGCCG
GGTTCTTTGG TGTTGATTGG TGGTGATCCG GGCATTGGTA AATCAACACT GCTGCTGCAG
ACCGCCACGG CTCTCTCCCA ACAGCAGCCA ATTCTCTACG TCTGTGCCGA GGAATCGGGT
CAGCAGGTCA AGCTGCGCTG GCAGCGGATT GCAGCCCACC GATCGCCCAA TCAGGCGGAT
CAGCAGTTCT ATTTACTGCC GGAAATCGAC CTGGATGCGA TCGTGGCGGA ACTGGAGACT
CTGCGTCCCC CTGTTGCCAT CATCGACAGT ATCCAAGCGC TCTACAGCCC AGCCCTCGGG
TCTGCGCCGG GCTCCGTCGC CCAAGTGCGG GAATGCACGG CGGCCCTGAT GCGCGTGGCG
AAGCAACTGA CAATCACCTT GCTGATCGTC GGTCATGTCA CCAAAGACGG CGCCATCGCG
GGGCCTAAGG TGTTGGAACA CCTCGTCGAT ACGGTGCTTT ACTTCGAGGG TGATCGCTTT
GCCAGTCACC GACTGCTGCG ATCGGTCAAG AACCGCTTTG GAGCGTCTCA GGAACTGGGC
ATCTTTGAGA TGGTCGATCG CGGTCTGGAA GAGGTCGGTA ATCCCTCAGC GCTGTTCCTG
GGCAGTCGTG ATCAAGCAAC TAGTGGTACA GCTACGATCG TCGCCTGCGA GGGCACCAGG
CCGCTGCTAG TCGAGCTGCA AGCCCTCGTT AGTCCCAGTA GCTATAGTTC ACCGCGCCGT
GCTGGTACGG GAATTGAGTA CAACCGCTTG CTGCAAATTT TGGCGGTCTT AGAAAAACGC
TTGGGTTTGC CGCTGTCAAA ATTCGATGCC TACGTCGCCT CGGCTGGCGG GCTGAATGTG
GCTGAACCCG CTGCGGATTT GGGAATTGCG ATCGCTCTTG TCGCCAGTTT CCGCGATCGC
TGCCTGCGGC CCGATACGGT ACTGATTGGT GAAATCGGCT TAGGGGGACA AGTGCGCCCT
GTCAGTCAGG TTGAACTGCG CCTCAAGGAG GCTGCCAAGC TCGGCTTTCA ACGAGCGCTC
TTACCCAAGG GACAGGAGCG CTGCGAGTCG GATCTGGAAC TGGTGCCGGT CAGCCGCTTG
GTTGATGCGA TCGGTCTAGC GCTGCAAGAA GCCCCCCCGA GCAGCGATCG TTCTTAG
 
Protein sequence
MARSRSEYVC QNCGHRAPRY VGRCPACESW NSLVEEAIAP TAKTAIATVL PSRQRRDRLA 
EAPPQAVAAQ PLSAIADVSQ QRIASGSGEF DRVLGGGLVP GSLVLIGGDP GIGKSTLLLQ
TATALSQQQP ILYVCAEESG QQVKLRWQRI AAHRSPNQAD QQFYLLPEID LDAIVAELET
LRPPVAIIDS IQALYSPALG SAPGSVAQVR ECTAALMRVA KQLTITLLIV GHVTKDGAIA
GPKVLEHLVD TVLYFEGDRF ASHRLLRSVK NRFGASQELG IFEMVDRGLE EVGNPSALFL
GSRDQATSGT ATIVACEGTR PLLVELQALV SPSSYSSPRR AGTGIEYNRL LQILAVLEKR
LGLPLSKFDA YVASAGGLNV AEPAADLGIA IALVASFRDR CLRPDTVLIG EIGLGGQVRP
VSQVELRLKE AAKLGFQRAL LPKGQERCES DLELVPVSRL VDAIGLALQE APPSSDRS