Gene Synpcc7942_1260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1260 
Symbol 
ID3773549 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1283244 
End bp1284071 
Gene Length828 bp 
Protein Length275 aa 
Translation table11 
GC content56% 
IMG OID637799690 
Producthypothetical protein 
Protein accessionYP_400277 
Protein GI81300069 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.617614 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTTGC GTCGTCCGAT AATTGCTGCG ATCGCGGCCT TAGCTTTAAC AGCAGGGCCT 
GCTCAGGCTC AATTTGACCC GCGTCTGCTC AACCTGCTGC GCGGCGGAAT CCAGCTGTTT
CAGGGCCTGA ACTTTAGCAA CCTCAACCCC AATCAAGAGG TGCAGCTGGG GCGGCAAATG
AACCAGCAGA TGCTGAGTCA ACGCTTTCGA CCTAATCGCG ATCGCATTTT GGCGGCCTAC
GTCAACGATG TAGGTCAACG ACTTGCCGCC GAAAGCGATC GCCCTGATCT GCCTTGGCAA
TTCCAGGTGG TGGATAGCCG CGAAATCAAT GCCTTTGCAA CGATGGGTGG CTACGTCTAC
ATCACCACGG GGATGCTCGG TTTCCTCAGC AATGAAGCGG AATTGGCCGG CGTTCTCGCC
CATGAAATCG GCCATATTGA AGGGCGGCAC TTGCCCCAGC GCTTGGGCCA GAGTTACTTA
CAGCAAGCTG GATTGTCTGC TCTGGGTGTC GATAGCGATC GCTTCACTCA AGTTGCCGTT
GACTTAGCCC TAAACCGCCC GAACAGTCGC AGCGCTGAGT TTGACGCGGA TGCTCGAGGG
CTGCGAATTA TGGAGCGGGC TGGCTATGCT CCTGCAGGCT TGATTTCAGT GATGAACAAG
CTGGCCGGCC TTGGCAATAA CGGCATAACC TTCCTCAGCA CCCACCCCGA TTCTCGGGAG
CGGGCGCGTG CCTTGACTGC GCAACTGAAT GGCGATCGCA ACCGCATGAA TCAAGGTTTT
GGCTTGGATG ATTGGACCTA TCGCCAGCAG GTGCTTGCTC GTCTTTAG
 
Protein sequence
MSLRRPIIAA IAALALTAGP AQAQFDPRLL NLLRGGIQLF QGLNFSNLNP NQEVQLGRQM 
NQQMLSQRFR PNRDRILAAY VNDVGQRLAA ESDRPDLPWQ FQVVDSREIN AFATMGGYVY
ITTGMLGFLS NEAELAGVLA HEIGHIEGRH LPQRLGQSYL QQAGLSALGV DSDRFTQVAV
DLALNRPNSR SAEFDADARG LRIMERAGYA PAGLISVMNK LAGLGNNGIT FLSTHPDSRE
RARALTAQLN GDRNRMNQGF GLDDWTYRQQ VLARL