| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1132 |
|---|
| Symbol | |
|---|
| ID | 3775082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | - |
|---|
| Start bp | 1151670 |
|---|
| End bp | 1153373 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637799558 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_400149 |
|---|
| Protein GI | 81299941 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.107849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.642224 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCA GCGATCAATT AATTAACTGC TATCTAGAAA TTGAGAGAAA CTACTTAAAT
GGTCATTTGG AAGCAGCAGA AGAATTATCA GATCAGCTAG TCAAACAACA ACCCCAAAAT
CCTCATTTAA GACTTCTGAG AGGTCACATA TACTATAGCC TTGGTGAATT AAAAAAGGCC
CGATATGAAT ATGAGTTGAC TAGGGGGTTG ACTGCCGATG AAGATTTGAT TGAACAGTCA
CTTAACGGCT TAGAGCGATG CGATAGTCTT CATCCTGACA GAGCTGCTAG CTCAAGCGAT
GCAACCATTA TTTTTCCCAG TCATGCAGTC ATTGCTGCTT CCAGTCTTGA GCAGTCTTTC
TTAAAGAACC GGGTTGAGGA GGAGACTAGG GATTATCAGC TGACAACTCA AAATGCTGAT
GAACCGTCTT TGTCTAGTTT TTCTACTCCT ACTTCTGATA CTGCCAGTGT AATTCAAGTG
GTCAGTGATG ATGAGATTCC AGAAGATTTA CATCTCTTGC AGGCTGATGA GTTTCTTCCC
CCTGTTAACC ATTGGTTTCA AATTGCAGGT ATCAGCTTAG TTCTGGGATT CATTGGGACA
ATTATTCTTA CTTCATTTCT TAAGTATAAA GTCGTTGTTA AGGCACCTGC TCTAATTCGT
CCGATTGGGG AAACACGGCT AGTTCAAGCT GCTGTTGAAG GTAAAGTCCG TCAGATTGCT
GTTCGTTCTA ACCAAGAAGT CCAGCAAGGT GATCCAATTA TTGTTATTGA TGACTCGCAG
CAAATTACCA AGCGAGACCA ACTGATTGAC AGTATTGCTA AAAATCAACT TAAACTTCAG
CAGATTGAGT CTCAAAAAGC TGCGATCGCA GAGGAAATGC TAGCTGAATC CAATAAAGTA
GCGCGGGGCA TTGATGTGAA TCAAGCTGAT ATTCAAACGG CAGAGGCTAA CTTGGCGCTC
GCAGCAGATG AATATTCTCG CTATCAAACT CTCTCTAATG CTGGGGCGAT CGCTGATCTC
TTAGTGCAAG AGAAGCTAGC CAGTTTTCGG GTAGCACAAG CCAATTTGAG CCGCGCGCGC
GAGCTAACAG CTCAGACTGA GGAACAGGGT TTAGCCACCC AAGCAAGACT CCGACAGATG
CAAGACCAGC TAGCTCAACA AGAATCGGAA ACGCTACAAC AGATCAAAGT GGAGCAAAAA
GAACTCCAAC AAATGAATAT CAACCTAGCA AATACTGTTG TTCGTGCCCC AATTTCTGGG
ATTATTCAGT CCATTAACCT GCGCAATCCT GATCAAGTAG TCGGCGTTGG CCAGGAAGTT
GCCCGCATTT TTCCAACTCA GAGTGGCTTG ACGATTAAAG CATTGGTTCC TTCACAGAAC
ATTTTGCCCG TCGCACTAGG ACAACGTGTG CAACTCCGGA TTGCCGCCTG CCCCTATCCG
GACTTTGGCA CCCTTGATGG CAAAGTCCAG GCGATCGCAC CCGATTCCGG CGGTTCATCT
AGTTCGGCAG CACAGACCAA TGAACCCGTT GCCGCGAATA GTCAAGCCTA TGAAGTGACG
ATCAAGCCTG AAGATCGTTC TCTAACTGAT GGTCAACGGG TTTGTAAAAT CCGTCCTGGG
ATGGATGCCG AAGCCGACAT TATTACCAAT GAAGAGACGG TACTCAAATT TATGCTGAGG
AAGGCTCGTT TGCTATGGCG ATAA
|
|---|
| Protein sequence | MNVSDQLINC YLEIERNYLN GHLEAAEELS DQLVKQQPQN PHLRLLRGHI YYSLGELKKA
RYEYELTRGL TADEDLIEQS LNGLERCDSL HPDRAASSSD ATIIFPSHAV IAASSLEQSF
LKNRVEEETR DYQLTTQNAD EPSLSSFSTP TSDTASVIQV VSDDEIPEDL HLLQADEFLP
PVNHWFQIAG ISLVLGFIGT IILTSFLKYK VVVKAPALIR PIGETRLVQA AVEGKVRQIA
VRSNQEVQQG DPIIVIDDSQ QITKRDQLID SIAKNQLKLQ QIESQKAAIA EEMLAESNKV
ARGIDVNQAD IQTAEANLAL AADEYSRYQT LSNAGAIADL LVQEKLASFR VAQANLSRAR
ELTAQTEEQG LATQARLRQM QDQLAQQESE TLQQIKVEQK ELQQMNINLA NTVVRAPISG
IIQSINLRNP DQVVGVGQEV ARIFPTQSGL TIKALVPSQN ILPVALGQRV QLRIAACPYP
DFGTLDGKVQ AIAPDSGGSS SSAAQTNEPV AANSQAYEVT IKPEDRSLTD GQRVCKIRPG
MDAEADIITN EETVLKFMLR KARLLWR
|
|---|
| |