| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1089 |
|---|
| Symbol | |
|---|
| ID | 3775039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 1104710 |
|---|
| End bp | 1107361 |
|---|
| Gene Length | 2652 bp |
|---|
| Protein Length | 883 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637799515 |
|---|
| Product | ATPase |
|---|
| Protein accession | YP_400106 |
|---|
| Protein GI | 81299898 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00000277828 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTCAT CGCTGGAACT TCTCACCATG CAACCGACGA ATCCCAATCA ATTTACTGAA
AAAGCCTGGG AAGCGATCGT TCGCACAACT GATGTTGCGA AACAAGCTCA GCATCAGCAA
ATTGAATCAG AACATCTGTT TTTGGCCTTG CTTCAAGAAC CAGGGCTGGC TCTGAATATC
CTCAAGAAAG CAGGGTTAGA AGCGGCACAA CTACAGCAGT TTACAGAGCG GTTTATTGCC
CGCCAGCCAA AGGTGAGTGG GGGTAATCAG TCGGTTTATC TGGGGCGATC GCTCGATCAA
CTCCTCGATC AGGCGGATCA GTTTCGCAAG GACTTTGGGG ATGAATTTAT TTCGGTTGAG
CACCTCATCC TCAGCTTTCC CCGCGATTCC CGTTTTGGGC GCTTGCTCAG TCAAGAATTC
AAGGTTGACG AGAAGCAGCT CCGTCAGATT ATTCAACAGA TTCGAGGCAG CCAAAAAGTG
ACTGATCAAA ACCCTGAAGG TAAATACGAA GCCCTCGAAA AATATGGGCG TGACCTGACT
GAAATGGCGC GTCGTGGCAA GCTCGATCCC GTCATTGGCC GCGATGATGA AATCCGTCGC
ACTATTCAGA TTCTCAGTCG GCGCACCAAG AATAATCCGG TCTTGATTGG CGAGCCTGGG
GTTGGCAAAA CTGCGATCGC AGAAGGATTA GCCCAGCGGA TTATTAATGG TGATGTCCCG
CAATCCCTCA AGGATCGGCG GCTGATTGCT TTGGACATGG GTGCCTTAAT TGCAGGTGCT
AAATTCCGGG GTGAGTTTGA AGAACGCCTG AAAGCAGTCC TCAAGGAAGT CACTGACTCT
GAAGGCATCA TTATCCTCTT TATTGATGAG ATTCATACGG TGGTTGGTGC TGGAGCGGTC
CAAGGCTCCA TGGATGCTGG CAACTTACTG AAGCCGATGC TGGCGCGGGG AGAATTGCGC
TGTATTGGGG CAACCACACT AGATGAATAT CGCCAATATA TTGAGAAGGA TGCGGCTCTT
GAACGACGCT TCCAACAGGT CTTTGTCGAT CAACCTACGG TAGAAGATAC GATCTCGATT
TTGCGTGGCT TAAAAGAGCG CTATGAAGTG CATCATGGCG TCCGTATTTC TGACAACGCT
CTTGTCGCTG CTGCTGTCCT CTCGACCCGC TACATCAGCG ATCGCTTCTT GCCAGATAAG
GCGATTGATT TAGTCGATGA GTCGGCGGCT CGACTCAAGA TGGAAATCAC TTCAAAGCCA
GAAGAATTAG ATGAGATCGA TCGCAAGATT CTCCAGCTCG AAATGGAACG ACTCTCCTTG
CAAAAAGAGA GTGATCTTGC CTCACAGGAA CGTCTGCAAC GGCTAGAAAA AGAGTTGGCC
GACCTAAAAG AAGAGCAGCG GAGTTTAAGC AGTCAATGGC AAGCTGAAAA GGATGTTATT
ACTGATATCC AATCCGTCAA GGAAGAGATT GATCAGGTTA ACTTGCTAAT TCAACAGGCA
GAGCGAGATT ACGACCTGAA CAAAGCAGCT GAGCTGAAGT ACGGCAAACT GACAGAACTG
CAGCGCAAGC TCAACGAAAT GGAGGGCGGT TTAGCGACGA CCCACACCAG TGGCAAGTCT
CTGCTGCGCG AAGAAGTGAC AGAGGTTGAC ATTGCTGAAA TCATCTCTAA GTGGACGGGG
ATTCCTGTCA GCAAGCTGGT TGAGTCAGAG ATGCAAAAGC TCCTCAATCT CGATGAAGAA
CTGCATCAAC GGGTGATTGG CCAAGAAGAA GCGGTTTCTG CTGTCGCGGA TGCAATTCAG
CGATCGCGAG CTGGGTTGTC TGATCCGAAA CGCCCGATCG CGAGCTTCAT CTTCTTGGGC
CCTACAGGGG TTGGTAAAAC CGAGTTGGCC AAAGCCCTAG CTGCCTATCT CTTCGACACT
GAAGACGCGA TGATTCGCAT TGATATGTCG GAGTACATGG AGAAACACGC GGTTTCGCGG
CTAATCGGCG CGCCTCCGGG CTACGTCGGC TATGACGAAG GCGGCCAACT CACGGAAGCG
GTGCGGCGGC GTCCCTATTC CGTCATCCTC TTTGATGAGA TTGAGAAGGC CCATCCAGAT
GTCTTCAACG TCATGTTGCA GATTCTCGAT GATGGTCGAG TCACCGATAG CCGCGGCCGA
ACAGTGGACT TCAAGAATAC AATCTTGATT TTGACCAGCA ATATCGGTTC GCAATACATT
CTCGATGTGG CTGGCGATGA CAGCCGCTAC GAAGAAATGC GGAGCCGTGT CACCGAAGCA
CTGCGGGCTA ATTTCCGACC GGAATTTCTG AATCGGGTCG ATGAGACAAT CATCTTCCAC
AGCCTGCGCA AGGATCAGTT GCAGCAGATT GTGCGGATTC AACTGCATCG CCTTGAAGAA
CGATTGAGCG ATCGCAAATT ATCGCTGTCG ATGAGTCCAG AAGCGATCGA TTTCTTGGTT
GAGATTGGTT TTGATCCCGT CTATGGAGCT CGTCCGCTCA AACGAGTCAT TCAGCGAGAG
TTGGAAACTG CGATCGCTAA GGCGATCCTC AGGGGGCAAT TCAGTGATGG CGACACGATT
CAAGTTGCTG TGGAGAATGA ACGACTCGTC TTTAAGGCGA TCGCAACTCC AACTGCGGTT
CCCCTGAGCT AA
|
|---|
| Protein sequence | MGSSLELLTM QPTNPNQFTE KAWEAIVRTT DVAKQAQHQQ IESEHLFLAL LQEPGLALNI
LKKAGLEAAQ LQQFTERFIA RQPKVSGGNQ SVYLGRSLDQ LLDQADQFRK DFGDEFISVE
HLILSFPRDS RFGRLLSQEF KVDEKQLRQI IQQIRGSQKV TDQNPEGKYE ALEKYGRDLT
EMARRGKLDP VIGRDDEIRR TIQILSRRTK NNPVLIGEPG VGKTAIAEGL AQRIINGDVP
QSLKDRRLIA LDMGALIAGA KFRGEFEERL KAVLKEVTDS EGIIILFIDE IHTVVGAGAV
QGSMDAGNLL KPMLARGELR CIGATTLDEY RQYIEKDAAL ERRFQQVFVD QPTVEDTISI
LRGLKERYEV HHGVRISDNA LVAAAVLSTR YISDRFLPDK AIDLVDESAA RLKMEITSKP
EELDEIDRKI LQLEMERLSL QKESDLASQE RLQRLEKELA DLKEEQRSLS SQWQAEKDVI
TDIQSVKEEI DQVNLLIQQA ERDYDLNKAA ELKYGKLTEL QRKLNEMEGG LATTHTSGKS
LLREEVTEVD IAEIISKWTG IPVSKLVESE MQKLLNLDEE LHQRVIGQEE AVSAVADAIQ
RSRAGLSDPK RPIASFIFLG PTGVGKTELA KALAAYLFDT EDAMIRIDMS EYMEKHAVSR
LIGAPPGYVG YDEGGQLTEA VRRRPYSVIL FDEIEKAHPD VFNVMLQILD DGRVTDSRGR
TVDFKNTILI LTSNIGSQYI LDVAGDDSRY EEMRSRVTEA LRANFRPEFL NRVDETIIFH
SLRKDQLQQI VRIQLHRLEE RLSDRKLSLS MSPEAIDFLV EIGFDPVYGA RPLKRVIQRE
LETAIAKAIL RGQFSDGDTI QVAVENERLV FKAIATPTAV PLS
|
|---|
| |