Gene Synpcc7942_1082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_1082 
Symbol 
ID3775032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1094751 
End bp1097516 
Gene Length2766 bp 
Protein Length921 aa 
Translation table11 
GC content57% 
IMG OID637799508 
ProductATPase, E1-E2 type 
Protein accessionYP_400099 
Protein GI81299891 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0474] Cation transport ATPase 
TIGRFAM ID[TIGR01517] plasma-membrane calcium-translocating P-type ATPase
[TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01523] potassium and/or sodium efflux P-type ATPase, fungal-type 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value8.13733e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTCAGCCT CGTTGACTGA TGTTCGCCAG CCGATCGCTC ACTGGCATAG TTTGACCGTT 
GAGGAATGTC ATCAACAGCT CGATGCTCAT CGAAATGGCT TAACTGCTGA AGTTGCTGCC
GATCGCCTAG CGCTGTATGG CCCCAATGAA TTGGTGGAGC AAGCAGGCCG CAGCCCATTG
CAGATTCTGT GGGACCAGTT CGCCAACATC ATGTTGTTGA TGCTGCTAGC GGTGGCTGTA
GTCTCTGGAG CGCTAGACCT GAGAGATGGC CAATTTCCCA AGGATGCGAT CGCAATTTTG
GTGATCGTGG TTCTGAATGC GGTGCTGGGT TATCTGCAAG AAAGCCGCGC TGAGAAGGCG
TTGGCTGCAC TCAAAGGCAT GGCGGCTCCT TTGGTTCGGG TGCGGCGCGA CAATCGCGAT
CAGGAAATCC CCGTCGCAGG CTTAGTACCC GGTGATCTGA TCCTGTTGGA GGCAGGCGAC
CAAGTACCGG CAGACGCGCG CTTGGTCGAA AGTGCCAACT TGCAGGTGAA AGAGTCGGCG
CTAACTGGCG AGGCCGAAGC GGTGCAGAAG CTGGCGGATC AGCAATTGCC GACCGATGTG
GTGATTGGCG ATCGCACGAA CTGTCTGTTT CAAGGGACGG AAGTCCTGCA GGGCCGTGGT
CAGGCTTTGG TCTATGCCAC GGGCATGAAC ACAGAGCTGG GGCGGATTGC GACGTTGCTC
CAAAGTGTAG AGAGTGAAAA GACGCCGCTT CAGCAGCGCT TGGACAAGTT GGGCAATGTA
CTGGTCAGCG GCGCTTTGAT CCTGGTGGCG ATTGTCGTTG GTTTGGGGGT GCTGAATGGT
CAGTCTTGGG AGGATTTGCT CTCCGTTGGC CTGAGCATGG CAGTGGCGAT CGTGCCAGAA
GGGCTACCCG CTGTGATCAC CGTGGCACTG GCGATCGGGA CTCAGCGCAT GGTGCAACGC
GAAAGTTTGA TTCGGCGCTT ACCCGCCGTG GAAACGCTTG GCTCAGTCAC AACCATCTGT
TCCGATAAGA CCGGCACGCT GACCCAAAAC AAGATGGTGG TGCAGCAGAT CCATACTCTC
GACCACGATT TCACGGTGAC GGGCGAGGGC TATGTGCCAG CGGGCCATTT TTTGATTGGG
GGTGAAATTA TTGTCCCGAA CGACTATCGC GACCTGATGC TGTTGTTGGC CGCGGGAGCG
GTCTGCAATG ATGCAGCGTT GGTGGCCAGC GGCGAGCACT GGAGCATTGT GGGCGATCCC
ACGGAAGGTT CGCTGCTGAC CGTGGCTGCG AAGGCAGGAA TTGACCCGGA AGGACTACAG
CGGGTGCTAC CACGCCAGGA TGAGATCCCC TTCACCTCTG AGCGGAAGCG CATGAGTGTG
GTGGTGGCTG ATCTGGGAGA GACGACCCTA ACGATTCGGG AAGGGCAACC CTACGTCCTC
TTCGTCAAAG GTTCAGCGGA GCTGATCTTA GAACGCTGTC AGCATTGCTT TGGTAATGCC
CAGCTTGAGT CACTCACTGC CGCTACACGC CAGCAGATCT TGGCAGCAGG AGAAGCCATG
GCCAGCGCAG GAATGCGCGT TTTGGGGTTT GCCTACCGTC CCTCGGCGAT CGCGGATGTG
GATGAGGATG CCGAGACAGA TCTGACTTGG CTGGGCTTGA TGGGTCAGAT TGATGCGCCG
CGCCCAGAAG TCCGAGAGGC GGTCCAGCGC TGTCGGCAAG CCGGCATTCG CACACTGATG
ATCACTGGCG ATCACCCGCT CACTGCTCAG GCGATCGCCC GGGATTTAGG CATCACGGAA
GTGGGCCATC CCGTTCTGAC GGGGCAACAA CTCTCAGCCA TGAATGGGGC TGAACTCGAT
GCCGCTGTGC GATCGGTGGA AGTTTATGCT CGAGTGGCTC CTGAGCACAA ACTGCGGATC
GTTGAGTCGC TCCAACGCCA AGGGGAATTT GTTGCCATGA CCGGCGACGG CGTCAATGAC
GCCCCCGCCC TGAAGCAGGC CAATATCGGT GTGGCGATGG GAATTACGGG CACCGATGTC
AGCAAAGAAG CCAGCGATAT GGTTCTGCTG GACGATAACT TTGCCACTAT TGTGGCGGCA
GTGGAAGAAG GCCGCATTGT CTACGGCAAC ATTCGCAAAT TTATTAAGTA CATTCTCGGC
AGCAACATCG GCGAGCTGTT AACGATCGCT AGCGCCCCGC TTTTAGGTTT GGGCGCGGTT
CCCCTAACAC CCCTGCAAAT CCTCTGGATG AACCTGGTCA CGGATGGCAT TCCCGCTTTG
GCTTTGGCAG TTGAGCCCGG CGACCCAACG ATCATGCAGC GCCGGCCTCA CAATCCGCAA
GAGAGTATTT TTGCGCGGGG ACTGGGCACT TACATGCTGC GGGTCGGGGT TGTCTTCTCG
GCCTTCACGA TTGTGCTGAT GGTGATTGCT TACCAATACA CGCAGGTTCC GTTACCGGGG
CTAGATCCGA AGCGCTGGCA AACGATGGTG TTTACGACGT TGTGCTTGGC CCAGATGGGA
CATGCGATCG CAGTGCGCAG TGATCTCTTA ACCATCCAAA CACCGATGCG AACGAACCCT
TGGCTCTGGC TCTCGGTCAT TGTGACGGCG TTGCTCCAGC TTGCTCTGGT TTATGTATCC
CCGCTTCAGA AGTTCTTTGG CACCCATAGC CTCAGCCAGC TCGATCTGGC GATTTGTCTG
GGCTTCAGTC TCCTGCTCTT TGTGTACCTC GAAGCTGAAA AGTGGGTGCG CCAGCGTCGG
TATTGA
 
Protein sequence
MSASLTDVRQ PIAHWHSLTV EECHQQLDAH RNGLTAEVAA DRLALYGPNE LVEQAGRSPL 
QILWDQFANI MLLMLLAVAV VSGALDLRDG QFPKDAIAIL VIVVLNAVLG YLQESRAEKA
LAALKGMAAP LVRVRRDNRD QEIPVAGLVP GDLILLEAGD QVPADARLVE SANLQVKESA
LTGEAEAVQK LADQQLPTDV VIGDRTNCLF QGTEVLQGRG QALVYATGMN TELGRIATLL
QSVESEKTPL QQRLDKLGNV LVSGALILVA IVVGLGVLNG QSWEDLLSVG LSMAVAIVPE
GLPAVITVAL AIGTQRMVQR ESLIRRLPAV ETLGSVTTIC SDKTGTLTQN KMVVQQIHTL
DHDFTVTGEG YVPAGHFLIG GEIIVPNDYR DLMLLLAAGA VCNDAALVAS GEHWSIVGDP
TEGSLLTVAA KAGIDPEGLQ RVLPRQDEIP FTSERKRMSV VVADLGETTL TIREGQPYVL
FVKGSAELIL ERCQHCFGNA QLESLTAATR QQILAAGEAM ASAGMRVLGF AYRPSAIADV
DEDAETDLTW LGLMGQIDAP RPEVREAVQR CRQAGIRTLM ITGDHPLTAQ AIARDLGITE
VGHPVLTGQQ LSAMNGAELD AAVRSVEVYA RVAPEHKLRI VESLQRQGEF VAMTGDGVND
APALKQANIG VAMGITGTDV SKEASDMVLL DDNFATIVAA VEEGRIVYGN IRKFIKYILG
SNIGELLTIA SAPLLGLGAV PLTPLQILWM NLVTDGIPAL ALAVEPGDPT IMQRRPHNPQ
ESIFARGLGT YMLRVGVVFS AFTIVLMVIA YQYTQVPLPG LDPKRWQTMV FTTLCLAQMG
HAIAVRSDLL TIQTPMRTNP WLWLSVIVTA LLQLALVYVS PLQKFFGTHS LSQLDLAICL
GFSLLLFVYL EAEKWVRQRR Y