| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1080 |
|---|
| Symbol | |
|---|
| ID | 3775029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Synechococcus elongatus PCC 7942 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007604 |
|---|
| Strand | + |
|---|
| Start bp | 1091781 |
|---|
| End bp | 1093124 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637799505 |
|---|
| Product | K+ transporter Trk |
|---|
| Protein accession | YP_400097 |
|---|
| Protein GI | 81299889 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00642094 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGGT CTTGGCGACT GACAGTGCCT AGGACAATTA GTCTAGGTTT TCTGGCAGTT
ATTTTGGCAG GCACATTTTT GTTGATGTTG CCATGGTCAC AATCAAGCGG GCAGTGGGGC
GGGTGGCTGC CTGCTCTGTT CACCTCAACT TCTGCAGTCT GTGTAACGGG ACTATCGGTT
GTTGATGTTG GGACCTACTT TTCTCCCTTT GGTCAATTAG TTCTGATCCT GCTCATTCAA
GTCGGTGGAT TAGGCTATAT GACTGCTACA ACTTTTCTGC TGATGCTACT GGGACTGCGC
TTTGGTCTAC GCGATAAAGT TGCTATTCAG CAGTCTCTCG ATCGATCAGG CATGGCTCAA
ATTCGGCAGG TTCTCAGAGC GATTGCGATC GCAACATTAG CTTGTGAAAC TGTTGGAGCG
ATCGCTCTTT TTACCCCGCT CATGTCACGC CATGAGACAT TGATGGGAGC AGCGTGGTCG
GCAATCTTCC ATAGTGTAAG TGCATTCAAC AATGCTGGCT TCAGCATCTA TCCTGATAAC
CTAGTTGGAT TTGTCGGATC TCTTCGGGTC AATTGGATCA TCGCGATTCT AATTGTTCTT
GGAGGGATTG GTTATCCTGT TATTTTAGAA GGCTGGCAGT TGTTAAAAGG CAAACGGCGC
TTATCACCTC TTAGCCTGCA TTTTCGTTTG GCTATTCTCA CTACCTTGGG ATTGTTGATA
GGAGGTTGGC TCCTGTTTCT TGGTGCTGAA CATTTGAATC CCAAAACGTT GGGCCCTCTA
CCGATTAACG ATCAAATGCT CGCGGCTTGG TTTCAAACCG TGACACCCCG TACAGCAGGA
TTTAACACCA TTGATCAAAC TCAAATGAGT TTATTTGCAC AGATGGTGAC GATCGCTCTC
ATGTTCATAG GTGCAAGTCC TGGTGGGACA GGGGGCGGTG TGAAAACAAC GGCTCTAGCT
ATCTTGATTG GCTGTACAAT TTCAGTCCTG CGAGGTCGTG AGTCAGTTCT AATGTTTCAA
CGGCAAATTC CTCAGAGGAT TGTTCAAAAA GCAACAGCAG TCGTGGTTGG CTCTTCCTTT
ACAATTATTT TGGGAACGCT AATCATGGCA GTTTTTGATC GGGACTTGGA ATTTATTCAA
CTTCTCTTCG AGGCAGTTTC TGCATTTGCA ACAGTCGGCC TTGATCTGGG AGTGACAGCG
ACAGCCAATG CAGGTGTTCA ACTCGTTTTA ATTGCTTTAA TGTACATCGG CAGGGTTGGA
ATCTTACTAC TCATGCAAGC TTTGCTTGGA GATCCCCACC GATCGCGTCT GCGTTATCCC
GAAGAAGAAT TACTCGTTGG TTAA
|
|---|
| Protein sequence | MQRSWRLTVP RTISLGFLAV ILAGTFLLML PWSQSSGQWG GWLPALFTST SAVCVTGLSV
VDVGTYFSPF GQLVLILLIQ VGGLGYMTAT TFLLMLLGLR FGLRDKVAIQ QSLDRSGMAQ
IRQVLRAIAI ATLACETVGA IALFTPLMSR HETLMGAAWS AIFHSVSAFN NAGFSIYPDN
LVGFVGSLRV NWIIAILIVL GGIGYPVILE GWQLLKGKRR LSPLSLHFRL AILTTLGLLI
GGWLLFLGAE HLNPKTLGPL PINDQMLAAW FQTVTPRTAG FNTIDQTQMS LFAQMVTIAL
MFIGASPGGT GGGVKTTALA ILIGCTISVL RGRESVLMFQ RQIPQRIVQK ATAVVVGSSF
TIILGTLIMA VFDRDLEFIQ LLFEAVSAFA TVGLDLGVTA TANAGVQLVL IALMYIGRVG
ILLLMQALLG DPHRSRLRYP EEELLVG
|
|---|
| |